Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0996.Seq
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   2.1  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.7  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   6.4  

>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 147 KSQILQSECITSFWQKYSESWCTHVTL 67
           K +ILQ E + S  Q+YS+SW + +TL
Sbjct: 140 KRKILQQEWL-SLNQRYSDSWPSKITL 165


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 245 YLSEIQIVLLLIITCYDVKC 186
           ++  + I ++LI+TCY V C
Sbjct: 192 WIHTVMIYIILIVTCYTVYC 211


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 50  DRNVFRNVTCVHHDSEYFCQKEVMHSDWRI*DLGLIVIV 166
           +R  +R+ T +     + C     H+ W + D G+ VI+
Sbjct: 597 NREPYRHATVLVAHDNFGCGSSREHAPWALNDFGIRVII 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,801
Number of Sequences: 5004
Number of extensions: 31496
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)