Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0996.Seq
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    28   4.8  
07_01_0418 - 3186093-3186437,3187286-3187438,3187541-3188398,318...    28   4.8  

>11_06_0223 - 21419128-21419397,21419493-21419747,21420243-21420414,
            21420530-21420757,21420916-21421049,21421309-21421392,
            21421554-21421760,21421871-21422203,21422343-21422449,
            21422823-21422988,21423127-21423230,21423347-21423507,
            21423595-21424495,21424642-21424732,21424837-21425127,
            21425491-21425575,21425665-21425747,21427653-21427773,
            21427785-21428260
          Length = 1422

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 144  SQILQSECITSFWQKYSESW 85
            SQ   S+CI +FW++Y   W
Sbjct: 1141 SQNFYSQCIANFWKQYRSYW 1160


>07_01_0418 -
           3186093-3186437,3187286-3187438,3187541-3188398,
           3188479-3188541
          Length = 472

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 150 PKSQILQSECITSFWQKYSESWCTHVTLRNTFLSKNSNL 34
           P  +  ++  ++S W+K    WC+HV L  +F S +  L
Sbjct: 32  PIKEAARTSILSSHWKKI---WCSHVNLEFSFYSMSPRL 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,023,698
Number of Sequences: 37544
Number of extensions: 155227
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)