Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0996.Seq
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 120 ITSFWQKYSESWCTHVTLRNTFLSKNSNLI-LKVLIRFSM 4
           ++ FWQ+Y   W   +     ++S+ S+ + +  ++ FS+
Sbjct: 91  LSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTIVAFSI 130


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 397 LQCNLKVIKYIISDFNF 347
           + C + +IKY++  FNF
Sbjct: 1   MSCGMGMIKYLLFIFNF 17


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 437 PCT*TLFYEPIATTTM 390
           P T  L+Y P+A+T++
Sbjct: 260 PMTNNLYYSPVASTSL 275


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 437 PCT*TLFYEPIATTTM 390
           P T  L+Y P+A+T++
Sbjct: 260 PMTNNLYYSPVASTSL 275


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 437 PCT*TLFYEPIATTTM 390
           P T  L+Y P+A+T++
Sbjct: 260 PMTNNLYYSPVASTSL 275


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 317 VAYFGNFLCLKIEV 358
           V++ GN+ CLK+++
Sbjct: 250 VSWRGNYSCLKVDL 263


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 317 VAYFGNFLCLKIEV 358
           V++ GN+ CLK+++
Sbjct: 301 VSWRGNYSCLKVDL 314


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 317 VAYFGNFLCLKIEV 358
           V++ GN+ CLK+++
Sbjct: 250 VSWRGNYSCLKVDL 263


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -3

Query: 118 YFFLAEIFRIMVHTCNITKHVS 53
           +FF A    ++   C  T HV+
Sbjct: 150 FFFAATSLLVVAEVCYFTAHVT 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,421
Number of Sequences: 438
Number of extensions: 2013
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)