Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0995.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.3  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    23   2.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.1  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    22   4.1  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    22   4.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.1  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = +2

Query: 266 MGWNWTAEDIPGMKPRPKWKPGAANKI 346
           M WN  +  + G      W P A N +
Sbjct: 439 MNWNMPSTSVVGDMLNMNWNPSAQNDL 465


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 247 YGYLISCFFSTTTGSMLIAFRGYFSFSLT 161
           +G+LI   F    G++ +AF G   FS+T
Sbjct: 326 FGFLIIQRFIHQIGTLEVAFTGKNFFSIT 354


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 360 YLLTNILLAAPGFHLGLGFIPGMSSAVQFHPMFFGKEDMDT 238
           Y   N  +   G +  L FI  +S  +  HP +FGK    T
Sbjct: 274 YCYYNSKMTKDGVYNTLFFIVYVSLLLGPHPTYFGKTGRKT 314


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 61  GRVSDPVVDSAKHCSC*GQC*QRSRFEPRELT 156
           GR   P V++ KH SC       SR  P E++
Sbjct: 342 GRKVSPRVNTIKHTSCIPTPNGDSRLPPLEIS 373


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 61  GRVSDPVVDSAKHCSC*GQC*QRSRFEPRELT 156
           GR   P V++ KH SC       SR  P E++
Sbjct: 342 GRKVSPRVNTIKHTSCIPTPNGDSRLPPLEIS 373


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 439 LNRQLWLPKKDREYTVQMEVL 501
           +N +   PK D  YT++ E+L
Sbjct: 832 INNKRLEPKGDNRYTIREEIL 852


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,664
Number of Sequences: 336
Number of extensions: 2319
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)