Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0995.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   5.6  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.7  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    25   9.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/64 (21%), Positives = 24/64 (37%)
 Frame = +2

Query: 137 LSPVSSPTRQGEAEITSEGYQHRTSCS*KETGNQVSISSFPKNMGWNWTAEDIPGMKPRP 316
           L+ +S P  Q + +     +   +  S  +T N  S    P N  W+         + +P
Sbjct: 181 LANISKPVVQAQKDSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEKSQENKP 240

Query: 317 KWKP 328
           K  P
Sbjct: 241 KPTP 244


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 460 PKKDREYTVQMEVLKQFQKNRLVH 531
           PKK+  Y VQ E L QF +  ++H
Sbjct: 408 PKKETSYQVQ-EKLSQFFQEEMIH 430


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
 Frame = +2

Query: 104 LARANVNNVPGLSPVSSPTRQGEAEITSEGYQHRTSCS*KETGN-------QVSISSFPK 262
           L+     +VP    VS P  +GE E   + +Q R +    E  N       Q+S+  +  
Sbjct: 44  LSNKEDTHVPKRQKVSEPYFRGETERNVKSHQDRAASIYHEAMNGASGIHKQMSLPEYSP 103

Query: 263 NMGWNW 280
            MG +W
Sbjct: 104 QMGNSW 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,186
Number of Sequences: 5004
Number of extensions: 37999
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)