Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0995.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1143 - 34862005-34862370,34862494-34862628,34862742-348629...    28   4.3  
02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202     27   7.5  
01_01_1028 - 8145716-8145841,8145943-8145988,8146329-8146548,814...    27   7.5  
10_08_0581 + 18930601-18930777,18930856-18930965,18931037-189313...    27   9.9  

>01_06_1143 -
           34862005-34862370,34862494-34862628,34862742-34862992,
           34863192-34863243,34863408-34863694,34864030-34864182,
           34865393-34865889,34866173-34866241,34867006-34867074,
           34867486-34867560,34869341-34869412,34869499-34869570,
           34869664-34869807,34870321-34870416,34870736-34870807,
           34871081-34871152,34871683-34871830,34872609-34872708
          Length = 909

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 302 MKPRPKWKPGAANKILVRRYRALREGVRCFSQEKESPAAKKEKDRA*TDNCGYXK 466
           M+ R K +   + + L+ RY    +GVRCF+ ++ + A     D A     GY K
Sbjct: 533 MRRRSKRRT-TSRRSLLSRYSVKVDGVRCFTFDEMAAATNDFTDSAQVGQGGYGK 586


>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
          Length = 580

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 159 HVKEKLK*PLKAISIEPVVVEKKQEIRYPYPPFQRTWDGIGRQK 290
           H+K+ +K PLK++ I  +V   +    Y  PP   T   + + K
Sbjct: 279 HLKDHIKRPLKSLHIHSLVDAYEHARNYDVPPRSTTTVALSQNK 322


>01_01_1028 -
           8145716-8145841,8145943-8145988,8146329-8146548,
           8146832-8146955
          Length = 171

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 309 GFI--PGMSSAVQFHPMFFGKEDMDT*FPVSFQL 214
           GFI  PG+     FHPMFF   +  T F V F L
Sbjct: 38  GFILGPGLRLPAHFHPMFFPIGNWATGFFVVFSL 71


>10_08_0581 +
           18930601-18930777,18930856-18930965,18931037-18931307,
           18931403-18931541,18932410-18932630,18932723-18932769,
           18933390-18933755,18934049-18934127,18934697-18934890,
           18935305-18935422
          Length = 573

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 179 ITSEGYQHRTSCS*KETGNQVSISSFPKNMGWNWTAE 289
           IT  G QHR +C   + G  V  ++ P   GWNWT E
Sbjct: 94  ITWNGIQHRKNCW--QDG--VLGTNCPIPSGWNWTYE 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,573
Number of Sequences: 37544
Number of extensions: 243549
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)