Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0995.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_38443| Best HMM Match : Lipoprotein_15 (HMM E-Value=0.14)           27   7.6  

>SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -3

Query: 369 KALYLLTNILLAAPGFHLGLGFIPGMSSAVQFHPMFFGKE 250
           K LY + NI    P FH  LGF  GM     F+ +  GKE
Sbjct: 79  KELYAMRNI---RPSFHSKLGFYGGMLYTGIFYCLLRGKE 115


>SB_38443| Best HMM Match : Lipoprotein_15 (HMM E-Value=0.14)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
 Frame = -3

Query: 396 WLKHLTPS---LKALYLLTNILLA----APGFHLGLGFIPGMSSAVQFHPMFFGKEDMDT 238
           W KH+  +   L    L TN L A      G+ LG   + G S  V  H +FF   +MD 
Sbjct: 199 WPKHMLNNGINLACFALFTNRLNAPRVITKGYTLGYIVLIGQSVLVTVHQLFFTATEMDD 258

Query: 237 *FPVSFQL 214
              V F +
Sbjct: 259 GMDVLFTM 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,950,029
Number of Sequences: 59808
Number of extensions: 281459
Number of successful extensions: 816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)