Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0995.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical ...    30   0.95 
AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    30   0.95 
Z72517-2|CAA96694.1|  490|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF040655-9|AAB95038.1|  288|Caenorhabditis elegans Hypothetical ...    27   6.7  

>AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical
           protein Y50D4A.1 protein.
          Length = 821

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 188 EGYQHRTSCS*KETGNQVSISSFPKNMGWNWTAEDI 295
           +G  HR +C+ K     +  SSF +N+ W+  AE+I
Sbjct: 120 DGLPHRPACTIKMRAISMMTSSFMENLEWSRLAEEI 155


>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 233 NQVSISSFPKNMGWNWTAEDIPGMKPRPKWKPGAANKIL 349
           N  S+S   K++GWN TA  +P     P W   A N  L
Sbjct: 281 NLRSVSFILKHLGWNTTANFVPTWVKLPGWLVWAGNSRL 319


>Z72517-2|CAA96694.1|  490|Caenorhabditis elegans Hypothetical
           protein T28F4.3 protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 353 RRYRALREGVRCFSQEKESPAAKKEKDR 436
           RR R  RE  +   QEKESPA K+EK +
Sbjct: 351 RRQRKKREEEKEKEQEKESPATKEEKKK 378


>AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical
           protein F19B2.3 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -2

Query: 340 ISCSWFPFRPWLHSWYVFCRPIPSHVLWKGGYGYLISCFFSTTTGSMLIAFRGYFSFSL 164
           I C+   F P L+ +Y+  + +PS       Y  ++S ++S+ T +++     YF+ ++
Sbjct: 81  IICNIIEFFPMLYDYYLSFK-VPSECFPFAPYSKIVSNYYSSMTNAVVTGMLTYFTVAM 138


>AF040655-9|AAB95038.1|  288|Caenorhabditis elegans Hypothetical
           protein T24E12.3 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +2

Query: 86  ILRSTALARANVNNVPGLSPVSSPTRQGEA--EITSEGYQHRTSCS*KETGNQVSISSFP 259
           ++R   +AR     VP      SP  Q EA  E+ +   +    C+   +    S +   
Sbjct: 69  LVRDWEIARRMFKLVPSTDSNFSPVLQAEALQEVAATSTE-ALDCASAMSQPVQSFNEQT 127

Query: 260 KNMGWNWTAEDIPGMKPRPK 319
             + WNW ++    +KP P+
Sbjct: 128 NWISWNWNSQSESRLKPAPE 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,151,419
Number of Sequences: 27780
Number of extensions: 213510
Number of successful extensions: 609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)