Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0995.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 251 RIWIPDFLFLFNYNWFYADSLQR 183
           +IW+PD  F  + N F  D  +R
Sbjct: 115 KIWVPDTFFANDKNSFLHDVTER 137


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 125  NVPGLSPVSSPTRQGEAEITSEGYQHRTSCS 217
            N  G  P+S   RQ  AE   E   H T+C+
Sbjct: 1061 NKVGSGPMSEERRQHTAEGVPEQPPHDTTCT 1091



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 439 LNRQLWLPKKDREYTVQMEVL 501
           +N +   PK D  YT++ E+L
Sbjct: 812 MNNKRLDPKSDSRYTIREEIL 832


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 240 YPYPPFQRTWDGI 278
           Y YPP    W GI
Sbjct: 42  YQYPPLNPMWHGI 54


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 240 YPYPPFQRTWDGI 278
           Y YPP    W GI
Sbjct: 8   YQYPPLNPMWHGI 20


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 92  AESTTGSETRPTEKIRQGTQ 33
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,231
Number of Sequences: 438
Number of extensions: 2951
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)