Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0995.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62170.1 68418.m07804 expressed protein various predicted pro...    31   0.51 
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein...    28   4.7  

>At5g62170.1 68418.m07804 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 703

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 29/115 (25%), Positives = 49/115 (42%)
 Frame = +2

Query: 146 VSSPTRQGEAEITSEGYQHRTSCS*KETGNQVSISSFPKNMGWNWTAEDIPGMKPRPKWK 325
           VS   R G  +IT++  Q R     K+  ++ +I +   +        ++P  KP     
Sbjct: 270 VSRRRRMG-TDITNKETQPREVHESKKASSKTTIITHDVSSSPRLGLTEVPKTKPTSLQT 328

Query: 326 PGAANKILVRRYRALREGVRCFSQEKESPAAKKEKDRA*TDNCGYXKKTESTQYR 490
              A+KIL      +++  R  +  +E    +KEK R  T  C   KK E+ + R
Sbjct: 329 NNVASKILETTAMKVQDKTRLPTVHEEPQGTEKEKQRKSTKKC---KKPENFKSR 380


>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 735

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 131 PGLSPVSSPTRQGEAEITS 187
           P   PVSSPTR+ E EI S
Sbjct: 147 PASVPVSSPTREAETEINS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,630,257
Number of Sequences: 28952
Number of extensions: 200729
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)