Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0994.Seq
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    31   0.11 
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    26   3.2  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    26   3.2  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    26   4.2  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   7.4  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.4  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   7.4  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.8  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   9.8  

>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -3

Query: 503 EDLKDELTEDXXXXXXXXKDEGLTLXKEGYKSDYDRNEYEERGSEHQEDTDSD 345
           +DLKDE +E          DEGL    E +  D D N+Y E   ++ E  D D
Sbjct: 148 QDLKDESSEAAHPNIEEEPDEGLEEEDEDFGDD-DDNDYGENYFDNGEGDDYD 199


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 233 ERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK 102
           ++ ++E KEKK+  ++  +  GK+   +P     + E+  K+ K
Sbjct: 206 DKLKKEEKEKKTAVDVSDSVNGKKRKTEPAGEGEQTEKKSKSTK 249


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 233 ERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 84
           ER Q+EV+E K+K N +     KRT  +      E   +  ++KK   SS
Sbjct: 41  ERRQKEVEEAKAKQNDKLLDLRKRTFTN----HLENNELADDEKKSQVSS 86


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = -3

Query: 224 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKE-----RVWKNQKKGTASSRLSPSR 66
           +R+ KEKK  ++  K  K     A     QR +E     R  K  KKG A  +  PS+
Sbjct: 174 RRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKKGKAPKKKKPSK 231


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 212 KEKKSKANMRKTTKGKRTTADPPNIQREKE 123
           K+K +  N +K  KGK T  + P    ++E
Sbjct: 518 KDKDASRNNKKNKKGKHTQIEDPTAASKEE 547


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 206 KKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 84
           K+ K N+  T  G   T    N  +EK R WK + +   +S
Sbjct: 160 KERKINIELTAGGGGKTEARMNKIKEKNRKWKEEMRQRVAS 200


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 155 ADPPNIQREKERVWKNQKKGTASSRLSPSRWVNP 54
           A  P I+++  R+W + K+G   S L   R ++P
Sbjct: 177 AAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSP 210


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 503 EDLKDELTEDXXXXXXXXKDE-GLTLXKEGYKSDYDRNEYEERGSEHQEDTDSD 345
           E L +E  ED        +DE G  L  EG + DY +N   +R    + D D+D
Sbjct: 46  EALVEEDIEDLDGEALDVEDEEGEDLFGEGMERDYQQNLELDRYDIEELDDDND 99


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = -3

Query: 251 TVLVPSERNQREVKEKKSKA-NMRKTTKGKRT-TADPPN------IQREKERVWKNQKKG 96
           T+   +   + E K+  SKA ++ +    KR+    P N      IQR +ER+   + K 
Sbjct: 390 TIAEAARAKENEAKDLYSKAESITQDLNAKRSHPPQPANLDYSSAIQRAQERLTLEESKL 449

Query: 95  TASSRLSPSRWVN 57
           T      PS++VN
Sbjct: 450 TDLRTAEPSQYVN 462


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 212 KEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 81
           KEKKSK   +K  K K  +AD   I ++ +   K  KKG + ++
Sbjct: 71  KEKKSKHEHKKHKKDK-PSADKDRISKKDK---KKSKKGKSKTK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,301
Number of Sequences: 5004
Number of extensions: 23942
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)