Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0994.Seq
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665... 29 1.9
02_04_0461 - 23125260-23125868 29 1.9
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 28 4.3
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 28 4.3
06_01_0647 - 4683689-4683988,4684349-4684489 28 4.3
03_06_0713 - 35687672-35689219 28 5.7
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 27 7.5
09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629 27 7.5
03_06_0146 - 31976538-31978643,31978653-31978751 27 7.5
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 27 10.0
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249... 27 10.0
03_01_0026 + 246682-246866,247791-247915,248452-248625,249377-24... 27 10.0
>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
13166756-13170655
Length = 1415
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 117 NSLFLSL-NIRRIRRCSLSFRSLSHIRLRLLFFH 215
N F+SL N IR CS++ + LSH+ L+L F H
Sbjct: 1034 NFSFMSLLNKLVIRACSITGKQLSHLILQLPFLH 1067
>02_04_0461 - 23125260-23125868
Length = 202
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 236 SERNQREVKEKKSKAN-MRKTTKGKRTTADPPNIQREKERVWKNQKK 99
++R QRE +EK+ K N +R TK +R T +P IQ+ + + Q K
Sbjct: 132 AKRKQREEREKRKKENVLRSGTKLQRVT-NPKTIQKIAKSKKRKQLK 177
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 239 PSERNQREVKEKKSKANMRKTTKGKRTTADPPNI 138
PS+ E +KK K + K KG DPP+I
Sbjct: 164 PSQDGGSEAAKKKKKKSKSKKKKGPLQQTDPPSI 197
>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -3
Query: 200 SKANMRKTTKGKR---TTADPPNIQREKERVWKNQKKG 96
SKA+ RK KG+ +T+D PN + K+ V Q+KG
Sbjct: 887 SKADRRKLKKGQNVGDSTSDSPNGEAAKKPVNSQQEKG 924
>06_01_0647 - 4683689-4683988,4684349-4684489
Length = 146
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -2
Query: 261 HWQN-GISAERTKSKRGERK 205
HWQ GI+A R + K+GERK
Sbjct: 118 HWQRPGIAAGRAEKKKGERK 137
>03_06_0713 - 35687672-35689219
Length = 515
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 287 LHTFPLHRIFRIRNLCCMSRRCRYPPGVQIRVLHIH 394
LH P + R+R L +S RY P + R+LH+H
Sbjct: 83 LHPSPRRNLARLRRLLSVSLLRRY-PALARRLLHLH 117
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -3
Query: 248 VLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK--GTASSRLS 75
+L E+ +RE +E++ + ++ K R ++EKE++ K GT+SS LS
Sbjct: 511 LLEEEEKEKREEEERRERRRTKEREKKLRRKERLKEKEKEKEKIPVQLKPYIGTSSSPLS 570
Query: 74 PS 69
S
Sbjct: 571 NS 572
>09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629
Length = 134
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 284 RRTHDKFSIGRTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPN 141
RRTH V E+ ++E KEK+ K K K K+ + N
Sbjct: 63 RRTHIVIDTVTPVDEKKEKEEKEKKEKEEKEKKEKEEKEKKKKEEEQN 110
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 521 ETSGFGEDLKDELTEDXXXXXXXXKDEGLTLXKEGYKSDYDRNEYEERGSEHQEDTDSD 345
E+S EDL D+ E DE + E + +EY + GS +E++D +
Sbjct: 280 ESSHDEEDLDDDDDESLDDDGSECFDEEDIICAENLDDEIFDDEYVDTGSSDEEESDDE 338
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 242 VPSERNQREVKEKKSKANMRKTTKGKRTTAD 150
+P + N +A RKT KGKR AD
Sbjct: 699 LPDQENNTGSSSSSRRAKGRKTDKGKRVRAD 729
>03_06_0617 -
35124114-35124148,35124243-35124335,35124415-35124919,
35125039-35125238,35125514-35125604,35125699-35126769
Length = 664
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -3
Query: 230 RNQREVKEKKSKANMRKT-TKG-KRTTADPPNIQREKERVWKNQKKGTASSRLSPSR 66
R +++ + K + N+ K ++G KRT+ D + +K+++ KN+ K ++ + S+
Sbjct: 545 RGKQKGRRKSREKNINKEPSRGTKRTSGDSTIEESQKQKLQKNKSKASSGGQKKTSK 601
>03_01_0026 +
246682-246866,247791-247915,248452-248625,249377-249467,
249516-250554
Length = 537
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 251 TVLVPSERNQREVKEKKSKANMRK-TTKGKRTTADPPNIQR-EKERVWKNQKKGTASSRL 78
TV P E KE+ K N ++ +++G R T+D + +R+W ++ L
Sbjct: 27 TVARPREEETEREKEEGRKRNRKEDSSRGVRKTSDRSRTEGFSLQRLWFFPERRCLGREL 86
Query: 77 SPSRW 63
S +W
Sbjct: 87 SARQW 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,569,844
Number of Sequences: 37544
Number of extensions: 147411
Number of successful extensions: 658
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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