Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0994.Seq
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 33 0.10
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 32 0.24
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 32 0.24
U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical pr... 31 0.42
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 30 1.3
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 29 2.9
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical pr... 28 5.1
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 28 5.1
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 28 5.1
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 28 5.1
AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical ... 28 5.1
AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine re... 28 5.1
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 28 5.1
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 28 5.1
U28991-3|AAK68309.1| 298|Caenorhabditis elegans Hypothetical pr... 27 6.8
L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical pr... 27 6.8
L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical pr... 27 6.8
U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical pr... 27 9.0
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 27 9.0
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 27 9.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.0
AL132949-23|CAB70113.2| 152|Caenorhabditis elegans Hypothetical... 27 9.0
AL132949-6|CAB70102.1| 152|Caenorhabditis elegans Hypothetical ... 27 9.0
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 27 9.0
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 27 9.0
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 27 9.0
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 27 9.0
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 27 9.0
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ... 27 9.0
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
protein T26A5.5a protein.
Length = 1076
Score = 33.5 bits (73), Expect = 0.10
Identities = 29/126 (23%), Positives = 51/126 (40%)
Frame = -3
Query: 494 KDELTEDXXXXXXXXKDEGLTLXKEGYKSDYDRNEYEERGSEHQEDTDSDXXXXXXXXXX 315
KDE+ ED ++E + G + D + EY+ E QE+ + D
Sbjct: 584 KDEIKEDINGFEEEFEEEYEGI---GQRDDQEEEEYDAEEPEDQEEEEED--EYQAEEYT 638
Query: 314 XXXXXXXXXERRTHDKFSIGRTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQ 135
RR+ K V V +++++E EK K R+ +K K+ +
Sbjct: 639 PTPVTRRSSSRRSGAKNDESEEVSV--KKDKKEKMEKVEKDEKRRNSKSKKDKISKEKKK 696
Query: 134 REKERV 117
+E+ER+
Sbjct: 697 KERERI 702
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 236 SERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPS 69
SE ++ E K KKSK N K+ K + T++ + E E+ K KKG S S
Sbjct: 156 SEESEEERKVKKSKKNKEKSVKKRAETSEESD---EDEKPSKKSKKGLKKKAKSES 208
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -3
Query: 284 RRTHDKFSIGRTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQ 105
++ +K RT + + E +E+KSK +KT K+ T+ + + E+ER K
Sbjct: 112 QKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKT---KKQTSSESSEESEEERKVKKS 168
Query: 104 KKGTASS 84
KK S
Sbjct: 169 KKNKEKS 175
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 236 SERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPS 69
SE ++ E K KKSK N K+ K + T++ + E E+ K KKG S S
Sbjct: 156 SEESEEERKVKKSKKNKEKSVKKRAETSEESD---EDEKPSKKSKKGLKKKAKSES 208
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -3
Query: 284 RRTHDKFSIGRTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQ 105
++ +K RT + + E +E+KSK +KT K+ T+ + + E+ER K
Sbjct: 112 QKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKT---KKQTSSESSEESEEERKVKKS 168
Query: 104 KKGTASS 84
KK S
Sbjct: 169 KKNKEKS 175
>U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical
protein T23B3.5 protein.
Length = 211
Score = 31.5 bits (68), Expect = 0.42
Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = -3
Query: 425 KEGYKSDYDRNEYEERGSEHQEDTDSDXXXXXXXXXXXXXXXXXXXERRTHDKFSIGRTV 246
K+G K + ++ + E++ + +ED D E + DK +
Sbjct: 82 KDGDKKEEEKKDEEKKDGDKKEDDKKDEKKDEDKKDEKKDADEKKDEEKKDDKKDEKKDE 141
Query: 245 LVPSERNQREVKEKKSK--ANMRKTTKGKRTTADPPNIQREKERVWKNQKK 99
++++++ K KKSK + +K+ K KR D + +K+ K K
Sbjct: 142 KKDEKKDEKKEKSKKSKKSSKSKKSKKSKREKKDEEKKEDDKKEDDKKDDK 192
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 242 VPSERNQREVKEKKSKANMRKTTKGKRTTAD-PPN 141
VPS+R + E KEK+ K R+ +GK+ D PN
Sbjct: 520 VPSKRRKGEPKEKREKKEKREKKEGKKGKKDKDPN 554
>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -3
Query: 239 PSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQ-----REKERVWKNQKKGTASSRLS 75
P E +Q+ K+S +N R ++ D N + REK+R K +++ +SSR S
Sbjct: 129 PPETSQQSTSRKRSASNSRSPSRSHSRRYDRDNGRQRSRSREKKRRKKERRRKRSSSRSS 188
Query: 74 PS 69
S
Sbjct: 189 SS 190
>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -3
Query: 239 PSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQ-----REKERVWKNQKKGTASSRLS 75
P E +Q+ K+S +N R ++ D N + REK+R K +++ +SSR S
Sbjct: 129 PPETSQQSTSRKRSASNSRSPSRSHSRRYDRDNGRQRSRSREKKRRKKERRRKRSSSRSS 188
Query: 74 PS 69
S
Sbjct: 189 SS 190
>Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical
protein R07E5.6 protein.
Length = 443
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 224 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK 102
+R+ KEK K M T K K+ D ++EKER+ K +K
Sbjct: 235 ERKEKEKVEKNKMEMTEKIKKKDEDE-KAKKEKERIDKEEK 274
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = -3
Query: 245 LVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSR 66
L SE ++++ K K ++ ++ +R+ PN ++EK R + G++S + +
Sbjct: 10 LSASESSRKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVR----NRSGSSSKKEKKNS 65
Query: 65 WVNP 54
VNP
Sbjct: 66 LVNP 69
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = -3
Query: 281 RTHDKFSIGRTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK 102
R H K + T SE VK K K+ KTT +TT +P + ++ +++ +++K
Sbjct: 70 RRHLKSTTPATDDDDSEEETTTVKSHKKKST--KTTDAPKTTEEPASTKKSEKKKTESKK 127
Query: 101 KGTASSRLSPS 69
++ +P+
Sbjct: 128 AVKTTTTAAPA 138
>Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 242 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 123
V + NQ+ VKE+ RKT + + A+ ++ EKE
Sbjct: 358 VKGKSNQKTVKERIRAEEARKTVEKEEEEAEEEAVEEEKE 397
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 242 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKER 120
+PS N+R KE++ + R+ + ADPP I + ER
Sbjct: 706 LPSYINRRMEKEREREIEYRRDREYSMPPADPPVITEKYER 746
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 242 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKER 120
+PS N+R KE++ + R+ + ADPP I + ER
Sbjct: 842 LPSYINRRMEKEREREIEYRRDREYSMPPADPPVITEKYER 882
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform c protein.
Length = 1099
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 242 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKER 120
+PS N+R KE++ + R+ + ADPP I + ER
Sbjct: 937 LPSYINRRMEKEREREIEYRRDREYSMPPADPPVITEKYER 977
>AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 242 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 123
V + NQ+ VKE+ RKT + + A+ ++ EKE
Sbjct: 358 VKGKSNQKTVKERIRAEEARKTVEKEEEEAEEEAVEEEKE 397
>AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine
receptor, class v protein4 protein.
Length = 321
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 102 LLIFPNSLFLSLNIRRIRRCSLSFRSLSHIR 194
L + N++FL + + RCS FR +H++
Sbjct: 96 LTVIKNAMFLGYTVVAVNRCSEIFRFRNHVK 126
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 263 SIGRTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGT 93
S G+TV + + + + EKK K +KT K A ++ K++ K+ KKG+
Sbjct: 1288 SDGKTVDIALDEDGHGIPEKKGK---KKTNKKAAQQASVKKDEKSKKKSKKDSKKGS 1341
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = -3
Query: 425 KEGYKSDYDRNEYEERGSEHQEDTDSDXXXXXXXXXXXXXXXXXXXERRTHDKFSIGRTV 246
K+G K + ++ + E++ + +ED D E + DK +
Sbjct: 82 KDGDKKEEEKKDEEKKDGDKKEDDKKDEKKDEDKKDEKKDADEKKDEEKKDDK----KDE 137
Query: 245 LVPSERNQREVKEKKSK--ANMRKTTKGKRTTADPPNIQREKERVWKNQKK 99
++++++ K KKSK + +K+ K KR D + +K+ K K
Sbjct: 138 KKDEKKDEKKEKSKKSKKSSKSKKSKKSKREKKDEDKKEDDKKEDDKKDDK 188
>U28991-3|AAK68309.1| 298|Caenorhabditis elegans Hypothetical
protein F08F8.6 protein.
Length = 298
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 284 RRTHDKFSIGRTVLVPSERNQR-EVKEKKSKANMRKTTKGKRTTADP 147
R+T K +IG T ++PS ++++ KEK+S N T K TA+P
Sbjct: 252 RKTPSKDTIGSTGVLPSNQDKKTPSKEKESVKNTPAPTP-KLGTAEP 297
>L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical
protein F42H10.7b protein.
Length = 531
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 343 AHTAKVPNTKNXVKRKSMKNVGPTTSSPLAER 248
A T P ++ ++RK NVGP+TS+ A+R
Sbjct: 494 AQTPGTPGIESMIRRKG-DNVGPSTSAGAADR 524
>L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical
protein F42H10.7a protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 343 AHTAKVPNTKNXVKRKSMKNVGPTTSSPLAER 248
A T P ++ ++RK NVGP+TS+ A+R
Sbjct: 492 AQTPGTPGIESMIRRKG-DNVGPSTSAGAADR 522
>U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical
protein C16D9.4 protein.
Length = 409
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 329 LCCMSRRCRYPPGVQIRVLHIHYDRN 406
LC + ++C PPG Q+ DRN
Sbjct: 348 LCALDQKCMNPPGAQVYCRFPDNDRN 373
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 236 SERNQREVKEKKSKANMRKTTKGKRTTADP 147
S +EVKEKK K + K +GK+ P
Sbjct: 1285 SVTKSKEVKEKKEKKKVEKKDEGKKKPGRP 1314
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 236 SERNQREVKEKKSKANMRKTTKGKRTTADP 147
S +EVKEKK K + K +GK+ P
Sbjct: 1300 SVTKSKEVKEKKEKKKVEKKDEGKKKPGRP 1329
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 236 SERNQREVKEKKSKANMRKTTKGKRTTADP 147
S +EVKEKK K + K +GK+ P
Sbjct: 17111 SVTKSKEVKEKKEKKKVEKKDEGKKKPGRP 17140
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 236 SERNQREVKEKKSKANMRKTTKGKRTTADP 147
S +EVKEKK K + K +GK+ P
Sbjct: 17126 SVTKSKEVKEKKEKKKVEKKDEGKKKPGRP 17155
>AL132949-23|CAB70113.2| 152|Caenorhabditis elegans Hypothetical
protein Y53F4B.26 protein.
Length = 152
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = -3
Query: 284 RRTHDK-FSIGRTVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 120
RRT + S + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 119 VWKNQKKGTASSRLSPSRWVNP 54
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
>AL132949-6|CAB70102.1| 152|Caenorhabditis elegans Hypothetical
protein Y53F4B.7 protein.
Length = 152
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = -3
Query: 284 RRTHDK-FSIGRTVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 120
RRT + S + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 119 VWKNQKKGTASSRLSPSRWVNP 54
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 254 RTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 123
R V ERN K + + + K+ GKR DP I R++E
Sbjct: 77 RLAYVNFERNDCARKVRYTLMDRLKSVLGKRVQCDPAGILRDQE 120
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 254 RTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 123
R V ERN K + + + K+ GKR DP I R++E
Sbjct: 77 RLAYVNFERNDCARKVRYTLMDRLKSVLGKRVQCDPAGILRDQE 120
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 242 VPSERNQREVKEKKSKANMRKTTKGKRTTADP 147
V + R REV EK S T G++ TA+P
Sbjct: 2076 VDARRFAREVSEKVSTGEWTMTLSGQKLTAEP 2107
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = -3
Query: 284 RRTHDK-FSIGRTVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 120
RRT + S + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 119 VWKNQKKGTASSRLSPSRWVNP 54
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = -3
Query: 284 RRTHDK-FSIGRTVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 120
RRT + S + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 119 VWKNQKKGTASSRLSPSRWVNP 54
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
protein F59H6.5 protein.
Length = 1486
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = -3
Query: 284 RRTHDK-FSIGRTVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 120
RRT + S + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 119 VWKNQKKGTASSRLSPSRWVNP 54
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,394,786
Number of Sequences: 27780
Number of extensions: 134264
Number of successful extensions: 775
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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