Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0994.Seq
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   6.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   6.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   6.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 212 KEKKSKANMRKTTKGKRTTADPPNIQREKER 120
           +EKKS  N     K + T+ +    ++E+ER
Sbjct: 45  REKKSYKNENSYRKYRETSKERSRDRKERER 75


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 212 KEKKSKANMRKTTKGKRTTADPPNIQREKER 120
           +EKKS  N     K + T+ +    ++E+ER
Sbjct: 45  REKKSYKNENSYRKYRETSKERSRDRKERER 75


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 212 KEKKSKANMRKTTKGKRTTADPPNIQREKER 120
           +EKKS  N     K + T+ +    ++E+ER
Sbjct: 45  REKKSYKNENSYRKYRETSKERSRDRKERER 75


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 212 KEKKSKANMRKTTKGKRTTADPPNIQREKER 120
           +EKKS  N     K + T+ +    ++E+ER
Sbjct: 45  REKKSYKNENSYRKYRETSKERSRDRKERER 75


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 212 KEKKSKANMRKTTKGKRTTADPPNIQREKER 120
           +EKKS  N     K + T+ +    ++E+ER
Sbjct: 278 REKKSYKNENSYRKYRETSKERSRDRKERER 308


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 425 KEGYKSDYDRNEYEERGSEHQED 357
           +  YK++ +  +Y ER  E   D
Sbjct: 47  QNSYKNEKEYRKYRERSKERSRD 69


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 425 KEGYKSDYDRNEYEERGSEHQED 357
           +  YK++ +  +Y ER  E   D
Sbjct: 47  QNSYKNEKEYRKYRERSKERSRD 69


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 299  PLHRIFRIRNLCCMSRRCRYPP 364
            P   ++   N C  +RRC  PP
Sbjct: 1684 PRRHMYEELNHCAPNRRCPPPP 1705


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 14/69 (20%), Positives = 28/69 (40%)
 Frame = -3

Query: 284 RRTHDKFSIGRTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQ 105
           R +  ++S  R     S +N+RE ++ +  +  R   + +R  +    I       +KN 
Sbjct: 255 RTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314

Query: 104 KKGTASSRL 78
                S +L
Sbjct: 315 NNNYNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 14/69 (20%), Positives = 28/69 (40%)
 Frame = -3

Query: 284 RRTHDKFSIGRTVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQ 105
           R +  ++S  R     S +N+RE ++ +  +  R   + +R  +    I       +KN 
Sbjct: 266 RTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325

Query: 104 KKGTASSRL 78
                S +L
Sbjct: 326 NNNYNSKKL 334


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 425 KEGYKSDYDRNEYEERGSEHQED 357
           +  YK++ +  +Y ER  E   D
Sbjct: 280 QNSYKNEREYRKYRERSKERSRD 302


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 224 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKERV 117
           + E+ + K +  +RK    K    DP     E+ RV
Sbjct: 356 ESELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRV 391


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 224 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKERV 117
           + E+ + K +  +RK    K    DP     E+ RV
Sbjct: 271 ESELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRV 306


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 224 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKERV 117
           + E+ + K +  +RK    K    DP     E+ RV
Sbjct: 590 ESELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRV 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,656
Number of Sequences: 438
Number of extensions: 1646
Number of successful extensions: 39
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)