Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0993.Seq
         (566 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.4  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   5.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   5.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.7  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   9.7  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 162 QRCTSGPGLTQ*KLWC 209
           QRC +G    + KLWC
Sbjct: 452 QRCNAGLVFDEEKLWC 467


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 386 SSIRSINGPQQGLRF 430
           + IR+I GP++ LRF
Sbjct: 278 TQIRNIRGPRKRLRF 292


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 503 VETFKCVNLLIS 468
           VE+F CVN L+S
Sbjct: 342 VESFVCVNTLVS 353


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 373 TGPNCEKYSRSCRWPTVQARLPT 305
           TG NCE Y R       +A +PT
Sbjct: 448 TGKNCEIYDRGFPGGLGRAVVPT 470


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 155 HFFSRASIDQSVLRSSSVAVCRGSCAENKLL*LTT 51
           ++ SRA I  SV   SS A   G C   +   LT+
Sbjct: 86  YYESRAHIHCSVKSESSQAAKYGGCFSGESTVLTS 120


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 497 FQLKVQLQNN*IF*ILVSF 553
           +QL V + NN  + I+VSF
Sbjct: 152 YQLSVLIDNNMSYIIIVSF 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,859
Number of Sequences: 336
Number of extensions: 2603
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)