Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0993.Seq
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 59 5e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 58 1e-09
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 58 1e-09
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 57 2e-09
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 56 4e-09
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 51 1e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 49 4e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 49 5e-07
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 48 1e-06
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 46 5e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 45 7e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 45 9e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 45 9e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 44 2e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 44 2e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 44 2e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 42 6e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 6e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 42 6e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 41 1e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 1e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 40 2e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 40 2e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 4e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 8e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 8e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.001
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.003
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.004
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.004
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 33 0.022
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 33 0.039
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.051
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.051
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.27
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.36
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.63
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 28 0.83
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 1.1
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 7.7
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 7.7
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.8 bits (136), Expect = 5e-10
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
++++G L W LR+YF QFG V V+ D +TG S+G+GF+ F +P + +K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 477 QIHTLEG 497
+ H L+G
Sbjct: 224 E-HHLDG 229
Score = 49.6 bits (113), Expect = 3e-07
Identities = 20/70 (28%), Positives = 39/70 (55%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ A+++VG + + R +F+QFG V A ++ D+ TG +G+GF+ + + SA
Sbjct: 245 KTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEAT 304
Query: 468 TNKQIHTLEG 497
++ T+ G
Sbjct: 305 MSQPYITIHG 314
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 57.6 bits (133), Expect = 1e-09
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
++VG L+W V + L + F ++G + ARV+ D +G SKGYG+++F +P AA A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAA 320
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
++VGNL++ L F G +QS R+ D +G KG+G++ F+ +A
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 480 IHTLEG 497
H + G
Sbjct: 428 GHFIAG 433
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 57.6 bits (133), Expect = 1e-09
Identities = 32/76 (42%), Positives = 41/76 (53%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
LYVG L +Q+R YFSQFGPV R+ +R TG SK Y FIEF S A+ +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD-VANVVAET 165
Query: 480 IHTLEGFNLRFNCKII 527
+H + CK+I
Sbjct: 166 MHNYLLYGKLLQCKVI 181
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
++VGN+ + V +Q+ E F+Q GPV++ ++V D TG KGYGF EF A A K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRK 67
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 56.0 bits (129), Expect = 4e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+YVGN+ + + Q+ + F Q GPV+S ++V D +G KGYGF E+ P+ AA A
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 51.2 bits (117), Expect = 1e-07
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+YVGNL W R L + F+ G V AR+ ++ TG SKG+G ++F + + AA + K
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEK 339
Score = 41.9 bits (94), Expect = 6e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 461
T + R+YVGNL++ V +L+E+ Q G V + ++ + GLSKG IE+++ A
Sbjct: 62 TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEAR 120
Query: 462 DA 467
A
Sbjct: 121 TA 122
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 49.2 bits (112), Expect = 4e-07
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFA----SPSAAADA 467
L+V NLA+ L +FS GP++ A VV + TG ++GYGF+ F+ + AA +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 468 TNKQIH 485
NK++H
Sbjct: 67 KNKKLH 72
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
++V NL + ++L +F QFGP+ A++V D +T S G GFI+F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 330 GHRQLREYFSQFGPVQSARVVFDRS-TGLSKGYGFIEFAS 446
GHR R G ++ A+V +++ G SKG+GF++F S
Sbjct: 511 GHRLKRG--KSGGVLKQAKVETEKAGAGRSKGFGFMQFIS 548
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.8 bits (111), Expect = 5e-07
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
A +YVGN+ ++V +L+ +F+ G V ++ D+ TG KG+ +IEF+ PS +A
Sbjct: 54 AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 47.6 bits (108), Expect = 1e-06
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 282 TARAARLYVGNLAWT-VGH-RQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 455
T L+V NL VG+ +QL E FS+FG ++S + ST +SKGYGF+ F+ P
Sbjct: 415 TIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFE 474
Query: 456 AADATN 473
A A N
Sbjct: 475 AVQAIN 480
Score = 25.0 bits (52), Expect = 7.7
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVF---DRSTGLSKG---YGFIEFASPSAAA 461
+YVGNL T L E F FG ++ ++ST SK + FI F + +A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTD-SKSPTLFAFITFENKCSAD 80
Query: 462 DATNKQIHTLEGFNLRFNCKIIRYS 536
+A I +L G + + N + Y+
Sbjct: 81 NA----IASLNGSSFQGNTLKVEYT 101
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 45.6 bits (103), Expect = 5e-06
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +3
Query: 273 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 452
M ST+R +Y+ L L Y ++FG V S++ + D T L KGYGF F
Sbjct: 289 MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
Query: 453 AA 458
+A
Sbjct: 349 SA 350
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 45.2 bits (102), Expect = 7e-06
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 243 TPVGIVSL*VMASTA-RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSK 419
TP S+ + TA +A LYVG L +V L E F+ GPV S RV D T S
Sbjct: 62 TPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSL 121
Query: 420 GYGFIEFASPSAAADATNKQIHTL 491
GY ++ F + A ++ +TL
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTL 145
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ L++ NL V +L+ FS FG + SA+++ D G SKG+GF+ + +P A A
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKA 420
Query: 468 TNK 476
+
Sbjct: 421 VTE 423
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
+++ NL + ++ L + FS FG + S +V D G +KGYGF+ F S +A
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESA 221
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 44.8 bits (101), Expect = 9e-06
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
++V LA + R+L ++F Q GPV+ A++V D+ +G SKG ++EF
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
Score = 36.7 bits (81), Expect = 0.002
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
RL V N+ + + ++ F FG ++ + D SKG+G+I++ +P +A +A K
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEK 399
Query: 477 QI-HTLEGFNLR 509
L G N+R
Sbjct: 400 MNGFDLAGRNMR 411
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 44.8 bits (101), Expect = 9e-06
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 449
R L+VGNL L+ +F + G V S R+ D+++G KGY F+EF +P
Sbjct: 90 RKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
L+VGNL + L+E+F Q G ++ R++ TG KG+GF++F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 44.0 bits (99), Expect = 2e-05
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 294 ARLYVGNLAWTV--GHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ LYV NL TV QL + FS FG + S+ + ++G+SKGYGF+ F AA A
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 468 TNKQIHTLEGFNLRFNCKIIRYSE 539
+ + G F C R S+
Sbjct: 442 KDTLNGMMVGKKRIFVCFAERKSD 465
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQS 380
++ +YVGN+ + ++ ++FS++G V+S
Sbjct: 16 SSTIYVGNIDSRLSDEEIIKHFSKYGQVES 45
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI---EFASP 449
+T A L+VGNL V R L + FS G + A V G SKGYGF+ F +
Sbjct: 94 NTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETA 153
Query: 450 SAAADATNKQ 479
AA +A N Q
Sbjct: 154 DAAIEAMNNQ 163
Score = 33.5 bits (73), Expect = 0.022
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
A +Y+GNL V L E Q GPV + + DR G+GF EF
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
++VGNLA+ L YF G + R+V D T L KG+ +I+F
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 339 QLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
Q+ + F+ FGPV++ + DR TG KGY IE+A+ A A +++
Sbjct: 25 QVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 41.9 bits (94), Expect = 6e-05
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
L++G L V +++ ++ G +++ +R TG++ GY F+EFASP A+ A +
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
Query: 480 IHTLEGFNLRF 512
+ G N F
Sbjct: 155 NKPIPGTNHLF 165
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYF-SQFGPVQSARVVFDRSTGLSKGYGFIEF 440
S A ++VG+L+ V + F S++ +SA+++ D T +S+GYGF+ F
Sbjct: 181 SKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 29.5 bits (63), Expect = 0.36
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 276 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 455
A TA + ++VG L+ V +L+ F FG + ++ KG GF++F + +
Sbjct: 298 ADTANST-VFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQS 350
Query: 456 AADATNK 476
A A N+
Sbjct: 351 AEIAINQ 357
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
++Y+ NL +G Q+ E FG + S +++ + + G SKG+ F EF +PS A
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDA 364
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
+A L V NL+ +LR+ F +FG +Q + D+ TG +KG+ F+ + A A
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260
Query: 471 NK 476
++
Sbjct: 261 DR 262
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
+A +Y+GNL + + + FS+FG +V D+ TG SKG+ F+++
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
L+V +A + +L++ FS+FG V R++ + T S+G+GF+ F++ A A
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSA 158
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
RL+VGNL V L + FS++ + +VV DR G ++G+GF+ F
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSF 77
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.3 bits (85), Expect = 8e-04
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
L+V L L FS+FG + S +V+ D+ TG S Y FIEF + + A K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 480 IHTL---EGFNLRFNCKIIRYSEF 542
+ L ++ F+ + RY ++
Sbjct: 306 QNVLIDDSRIHVDFSQSVARYRQY 329
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.3 bits (85), Expect = 8e-04
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
+++ L++ + F+++GP++ RVV ++ TG S GY F+ F
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
RL++ NL ++ L+ F FG ++ + D+ T KG+ +I+F A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
Score = 28.3 bits (60), Expect = 0.83
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSA--RVVFD-RSTG--LSKGYGFIEFASPSAA 458
A +YV NL ++ + ++ F SA R D + G LS G+GF+EF ++A
Sbjct: 619 ATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASA 678
Query: 459 ADATNKQIHTLEGFNL 506
A +H + GF L
Sbjct: 679 VAA----MHAMNGFVL 690
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 303 YVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+VGNL++ + L ++F + V S R+V D T S+G+G++EF + + A
Sbjct: 97 HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAA 149
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.9 bits (79), Expect = 0.004
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFASPSAAADA-TN 473
++VG+L T L F P SA+++ D TGLS+ YGF+ F+S A +
Sbjct: 184 IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMH 243
Query: 474 KQIHTLEGFNLRFN 515
Q + +G LR +
Sbjct: 244 MQGYLCQGRPLRIS 257
Score = 35.1 bits (77), Expect = 0.007
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
++VG LA + + L+ F FG + + ++ F KG GF++++ SAA A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAINTM 352
Query: 480 IHTLEG 497
L G
Sbjct: 353 QGALVG 358
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 35.9 bits (79), Expect = 0.004
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
R A ++VGNLA +V L F FG + S + + + + Y F+EF P A +A
Sbjct: 4 RKATVHVGNLAPSVTESLLYNAFIPFGEIISV-ALHRKEKAVDRSYAFVEFDEPEDAKEA 62
Query: 468 TNKQIHTL 491
+++
Sbjct: 63 MENMNYSI 70
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.5 bits (73), Expect = 0.022
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+YVGNL++ Q+ FS+ G ++ + DR T G+ F+E+ A D+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 32.7 bits (71), Expect = 0.039
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+++V N++ V QLR +F FG V + + TG S G I F S+ + A +
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
Query: 477 -QIHTLEGFNLRFNCK 521
+I + LRF+ K
Sbjct: 155 AKIAVQQANGLRFSGK 170
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.3 bits (70), Expect = 0.051
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
+ V NL V + E F +G + + + + L+KGY +IE+ AA+A +K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 480 IHT-LEGFNLRFNCK 521
+ L+G L + K
Sbjct: 161 NNAELDGEELFVSIK 175
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.051
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHT-LEGFNLR 509
+++YF Q+GP+ +V+ D L + Y F++F + A+ A ++ +T L+G ++R
Sbjct: 99 VKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIR 152
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 29.9 bits (64), Expect = 0.27
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRST--GLSKGYGFIEF 440
R+YVG L+ ++ L FS+FG V + ++ ++ST G + + ++ F
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII-NKSTPVGTIQRFAYLNF 54
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.5 bits (63), Expect = 0.36
Identities = 9/39 (23%), Positives = 25/39 (64%)
Frame = +3
Query: 276 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVV 392
++TA + +++GNL + +++ E F +FG ++ +++
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.63
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+++GNL + ++RE FGP+ ++V +R+ F+ F + +AA A +
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN------IAFVHFLNIAAAIKAVQE 260
Score = 26.6 bits (56), Expect = 2.5
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 273 MASTARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 449
+A A+R +Y+GN ++ +L+E F +FG ++ V F R K F+ F S
Sbjct: 406 LAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIE--YVNFFR----EKNCAFVNFTSL 459
Query: 450 SAAADATNK 476
++A +A ++
Sbjct: 460 ASAINAIDR 468
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 28.3 bits (60), Expect = 0.83
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 349 SRSCRWPTVQARLPTYRRAALAVLAITYNDTIPTGVRSVRRSK 221
S + +WP V+ +LP + V T+N +P G RS+
Sbjct: 668 STAIKWPLVRFKLPNGGERTIVVQRETWNIELPNGEVQASRSQ 710
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 412 RPVDRSN-TTLALCTGPNCEKYSRSCRWPTVQARLPTYRRAALAVLAITYNDTI 254
R +D SN +T + T N E+Y R Q+R+ L+++ +TYN I
Sbjct: 913 RLLDASNRSTSSFETSKNMEEYERIDAMAKEQSRICQKLEKELSIIQLTYNSRI 966
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 204 WC*LQGFDRRTLLTPVGIVSL*VMASTARAARLYVGNLAWTVGHRQLREYFSQF 365
W + D + PVG+ S AS+ +Y+G + ++ H +FS+F
Sbjct: 511 WYYFRFLDSKNSELPVGLAS----ASSLMPVDIYIGGVEHSILHLLYSRFFSKF 560
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 32 ERW*ACKWSAKEVCFPRKILYKRRHSRNAAQTGLLKLY 145
ERW KW E C+ I +RR+ N G+ + +
Sbjct: 162 ERW--LKWEPDENCWMSYIRMERRYHENERARGIYERF 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,631
Number of Sequences: 5004
Number of extensions: 42810
Number of successful extensions: 143
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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