Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0993.Seq
(566 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 62 3e-10
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 57 1e-08
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 55 4e-08
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 53 1e-07
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 50 2e-06
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 49 2e-06
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 48 5e-06
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 44 7e-05
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 44 7e-05
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 44 7e-05
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 43 2e-04
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 42 3e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 42 3e-04
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 42 4e-04
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 42 5e-04
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 6e-04
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 40 0.001
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 40 0.001
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.001
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 40 0.001
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 39 0.002
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 38 0.008
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 37 0.010
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.017
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 35 0.040
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.053
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.093
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 34 0.093
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 33 0.12
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 33 0.22
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 32 0.38
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 0.50
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19) 31 0.66
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 31 0.66
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 31 0.87
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 30 1.5
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 29 2.0
SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09) 29 2.0
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 29 2.6
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_52296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 28 6.1
SB_20919| Best HMM Match : WSC (HMM E-Value=1.1e-12) 27 8.1
SB_2275| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 62.1 bits (144), Expect = 3e-10
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA-TNK 476
++VGN+ + QL+E FS+ GPV S R+VFDR TG KGYGF E+ A A N
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 477 QIHTLEGFNLR 509
+ L G LR
Sbjct: 87 NGYELNGRALR 97
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+L+VG + + G LR++F+QFG ++ A V+ DR T SKGYGF+ A+ AA A
Sbjct: 11 KLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKN 70
Query: 477 QIHTLEGFNLRFN 515
+ +EG N
Sbjct: 71 KRPMIEGRQANVN 83
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
RLYVG+L + + ++ F FG V S ++++D T SKGYGF++F A+A +
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFRE----AEAAKR 298
Query: 477 QIHTLEGFNL 506
+ + GF L
Sbjct: 299 AMEQMNGFEL 308
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 315 LAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 455
LA + R L E+FS+ G V R++ DR++ SKG +IEF SA
Sbjct: 153 LARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSA 199
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
+++GNL + + LRE F+ G V+S R++ DR TG+ KG+G++ F S A A
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMN 117
Query: 480 IHTLEGFNLR 509
+G +R
Sbjct: 118 NAEFKGRKIR 127
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/63 (39%), Positives = 37/63 (58%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ LY+ NL + +LRE FS +G + SA+V+ D G SKG+GF+ F+SP A A
Sbjct: 210 QGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKA 268
Query: 468 TNK 476
+
Sbjct: 269 VTE 271
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
+YV N + Q++E ++ G + S +V+ D G SKG+GF+ F +P A +A N
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAVN 167
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +3
Query: 273 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 452
M+ + + ++++G L W L++YFSQ+G + V+ R G S+G+GF+ + S
Sbjct: 43 MSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDC-VIMKRD-GRSRGFGFVTYESSD 100
Query: 453 AAADATNKQIHTLE 494
+ + K+ H L+
Sbjct: 101 SVNEVLKKKDHVLD 114
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 48.0 bits (109), Expect = 5e-06
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPV-QSARVVFDRSTGLSKGYGFIEFAS---PSAAA 461
A L++GNL V + L + FS FG + Q+ +++ D TG SKG+ FI FAS AA
Sbjct: 100 ANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAI 159
Query: 462 DATNKQ 479
+A N Q
Sbjct: 160 EAMNGQ 165
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +3
Query: 273 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
+A + A +YVG L V + E F Q GPV + + DR T L +GYGF+EF
Sbjct: 6 IAERNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEF 61
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
L+VGNL + Q + S +G ++ +V TG SKGYGF+E+A+ A A +
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQL 174
Query: 480 IHT 488
++T
Sbjct: 175 LNT 177
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQI-HTLEGFNLR 509
++E FSQ G V A+V + + G S+G+ F+++A+ A +EG N+R
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIR 278
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
+L+VG L++ L+EYFS++G + + D TG +G+ F++F S A
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEA 83
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQ-FGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 464
R +++VG L ++REYF + + PV+ + + S+ +G+ F+ F S
Sbjct: 101 RVKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDK 160
Query: 465 ATNKQIHTLEG 497
Q H +EG
Sbjct: 161 ICETQFHNIEG 171
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 461
T + +LYV +L V ++E FS +G V++ + DR+ LS+G+ ++E+ P
Sbjct: 1153 TPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECE 1212
Query: 462 DA 467
A
Sbjct: 1213 KA 1214
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +3
Query: 243 TPVGIVSL*VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKG 422
T + ++S + S + R+YVGNL V + L + F ++G + A V G
Sbjct: 244 TTLSLMSSNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHI--ADVDLKNRRGAGPP 301
Query: 423 YGFIEFASPSAAADAT-NKQIHTLEGFNLR 509
+ F+EF P A DA + H +G+ +R
Sbjct: 302 FAFVEFEDPRDAEDAVKGRDGHEFDGYRIR 331
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
L+V NL + ++ E FS+ G V+ R+V +R+ G KGYG++E+ S+A+ A
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRA-GKPKGYGYVEYEQESSASTA 227
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
R +LY+GNL + ++ + F +FG V+ ++ D+ +G S+G+GF+ S A A
Sbjct: 7 RGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPA 65
Query: 468 TNK 476
K
Sbjct: 66 IEK 68
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/62 (45%), Positives = 36/62 (58%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
AA L V NL V + L + FSQFG V+ A VV D G SKG+G +EF+ + A +A
Sbjct: 125 AAALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCD-VRGRSKGHGIVEFSRKNNAHNAM 183
Query: 471 NK 476
K
Sbjct: 184 QK 185
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFA 443
A+L+VG L + LREYF +G + V+ D +T S+G+G++ FA
Sbjct: 14 AKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFA 63
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
++++G L + Q++E S FG +++ +V D +TGLSKGY F E+
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEY 721
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
++VG LA L++YF QFG V+S R++ G S+ YGF+ F + + K
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIM-RTFLGYSRNYGFVLFKDDGPSKEVLKKS 140
Query: 480 IHTLEG 497
H + G
Sbjct: 141 -HVING 145
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
R L+V NL+ + YF +G V ++ DR TG SKG G ++ P
Sbjct: 317 RERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKI 376
Query: 468 TNKQIHTL 491
+ +H +
Sbjct: 377 LEEPVHVI 384
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIE 437
+YVG L + +RE+F +FG +++ + + + S G G E
Sbjct: 159 IYVGGLPSHFTEQTVREHFKKFGVIEAVKFIENTSVGAKTGXXXXE 204
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 303 YVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFA-SPSAAADATNKQ 479
YVG LA V + L F FG + ++ D +T +G+GF+EF + AA N
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 480 IHTLEGFNLRFN 515
L G +R N
Sbjct: 68 ESELFGRTIRVN 79
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ A LYV N+ + + R+ F +G + + R++ D+STGL KG GF+ + + A A
Sbjct: 131 KGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAA 190
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
LYV N+ + + F Q G V +++D KG+ F+ A+ A +A
Sbjct: 277 LYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNA---- 332
Query: 480 IHTLEGF 500
I TL GF
Sbjct: 333 IQTLNGF 339
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
+Y+G++ +++++F QFG V R+ + + SKGY F+EFA A A +
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAAD 157
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
LY+ L L ++G + S + + D+ T L KGYGF++F SP +A A
Sbjct: 102 LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKA 157
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI 434
R Y+GNL+++V + L E F V RV+ DR TG +G+GF+
Sbjct: 83 RCYIGNLSYSVDEQALEEKFHDCNVVD-VRVITDRETGRPRGFGFV 127
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
L V L + +++EYF++FG + V D +T S+G+GF+ F A + +
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTS 176
Query: 480 IHTLEG 497
H ++G
Sbjct: 177 -HRIQG 181
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 446
+L+VG L + + L EYF+QFG V + + +GF+ FAS
Sbjct: 200 KLFVGRLPESTTEKTLMEYFAQFGEVTDVYI-----PKPFRHFGFVTFAS 244
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
+YVGNL +++ + L + F ++G V ++ D+ T S+G FI F +A +A
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAV-AA 70
Query: 480 IHTLEGFNLRFNCKIIR 530
++ + F C I +
Sbjct: 71 VNKKQMFGRTIKCTIAK 87
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/70 (25%), Positives = 38/70 (54%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
++ + N+ ++G Q+ E+FS G + S + + T KG+ + FAS + A + K
Sbjct: 122 KVILKNIPSSIGESQILEHFSSSGEIASVYIPENLKTKERKGHCIVTFASVTEAFEVVKK 181
Query: 477 QIHTLEGFNL 506
+ H + G+++
Sbjct: 182 RKHHIHGYDI 191
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 452
R++ G+L V L F+++ A++V D+ + SKGYGF+ F P+
Sbjct: 218 RIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPN 269
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 285 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 464
A R+YVG++ + + +R F FGP+ + +D KG+ F+E+ P AA
Sbjct: 99 ALMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQL 158
Query: 465 ATNKQIHTLEG 497
A + L G
Sbjct: 159 ALEQMNGVLLG 169
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
AR+Y+ ++ + ++ F FG V + + TG KGYGFIE+ + +A DA
Sbjct: 199 ARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDA 256
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
R++V +LR +F ++G V+ +++V D+ G+SKGY FI F S A
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKH-GVSKGYAFITFESQEVA 61
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKG 422
+++VGN+ + V R+L+++F FG V A+++ DR SKG
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQIIMDRVKKRSKG 121
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 324 TVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFN 503
++ +++ F G V S +++ DR+TG S GY F+ + +P D NK + + G
Sbjct: 37 SMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNP----DDANKAVREMNGAR 92
Query: 504 LR 509
L+
Sbjct: 93 LQ 94
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 339 QLREYFSQFGPVQSARVVFDRSTGLSKG 422
+L +FS FGPV R+V DR TGL+KG
Sbjct: 1081 ELETFFSNFGPVADVRIVCDRRTGLNKG 1108
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 342 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEG 497
LR++F +FG ++ V+ D T S+G+GF+ F P A N L+G
Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDG 175
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPV 374
++++G L+ +++YFSQFG V
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 342 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
LR F FG ++ ++V D T +KGYG+++F S AA A
Sbjct: 69 LRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMA 110
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 357 SQFGPVQSARVVFDRSTGLSKGYGFIEFASP 449
S GP+++ R+ D++TG + +GF+EF+SP
Sbjct: 478 SNAGPLENVRIPTDKNTGQQRSFGFVEFSSP 508
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
+++G L+ V L E F++FGPV+ ++ D S G S+ GF+ F S S A+A N
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDES-GKSRQSGFVHFWS-SDVAEAAN 581
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/69 (34%), Positives = 31/69 (44%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
A + V NL+ L+E F GP+ + D+ T SKG+ FI F AA A
Sbjct: 181 ATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARA-- 238
Query: 474 KQIHTLEGF 500
I L GF
Sbjct: 239 --IEVLSGF 245
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
+++ NL++ + + F QFG + +VV D T SKG F+++ S +
Sbjct: 418 VFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAAT 477
Query: 480 IHTLEGFNLRFN 515
EG L N
Sbjct: 478 DEDSEGLFLDGN 489
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 35.1 bits (77), Expect = 0.040
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
L+V L L FS+FG + S V+ D+ TG S Y FIEF
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEF 168
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 34.7 bits (76), Expect = 0.053
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
L V NL + L++ F ++G + + DR+T S+G+ F+ F A DA
Sbjct: 18 LKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDA 73
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.9 bits (74), Expect = 0.093
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
+++++G + +L F + G + R++ D +GL+KG+ F F++ A +A
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 474 K 476
K
Sbjct: 212 K 212
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 33.9 bits (74), Expect = 0.093
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
L+VGN+ T + L+E F ++G V + + G + Y F++FA S+A A K
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEVIDVDI--KKQPG-NNPYAFVQFAELSSAIQARRKM 307
Query: 480 IHTLEGFN 503
G N
Sbjct: 308 DREYVGRN 315
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSAR 386
++VGNL T+ + L++YFS++G V+S R
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESVR 51
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 32.7 bits (71), Expect = 0.22
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 363 FGPVQSARVVFDRSTGLSKGYGFIEF 440
F +A+V+FDR +G S+G+GF+++
Sbjct: 309 FEGCSNAKVIFDRESGESRGFGFVDY 334
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 446
+++GNL++ L +F + G + RV+ G S+G+G+ +F S
Sbjct: 182 VFLGNLSFDADEETLAAFFEEKGLSATCRVI--TQEGRSRGFGYADFTS 228
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
R ++VG + + +L F GP+ R++ D G ++GY F+ + S D
Sbjct: 72 RGCEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMD-FNGQNRGYAFVVYTS----KDD 126
Query: 468 TNKQIHTLEGFNLR 509
+ + TL + +R
Sbjct: 127 AKRCVKTLNNYEIR 140
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
LYVG L V + LR++F QFG ++S +V + F+ F S +AA A ++
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISMV------PRQNCAFVCFTSRAAAEAAADRS 359
Query: 480 IHTL 491
+ L
Sbjct: 360 FNKL 363
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 387 VVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTL 491
++FD++T +G+GF+ F S ++A A + Q H +
Sbjct: 2 LMFDKATQRHRGFGFVTFESENSADKACDTQYHLI 36
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI 434
+YVGNL V +L++ FSQ+G + +V D KGY FI
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFAD------KGYAFI 655
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 375 QSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ RVV D + SKG+GF+ F AA A
Sbjct: 540 REVRVVKDPAKNKSKGFGFVSFVRREDAAKA 570
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 315 LAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
L + H L++ FS+FG V + + G KG+ FIEF S A
Sbjct: 95 LPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQA 142
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 393 FDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEG 497
F+R + KG+GF+ F P+ K+ H L+G
Sbjct: 134 FERRARMLKGFGFVTFRDPATIESVLAKKPHILDG 168
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGY 425
+A ++++G LA+ L+EYFS +G V+ + + SK +
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYGMVEVKKAEYRERGQQSKDH 245
>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
Length = 648
Score = 31.1 bits (67), Expect = 0.66
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +3
Query: 348 EYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLRFNCKII 527
++ S FG ARVVF T L FIE + +A+ T K HT + N+R +
Sbjct: 224 DFHSYFGCTVHARVVFTTLTSLDGLAKFIEPSQLTASLGGTLKYDHT-DWLNMRLALEKF 282
Query: 528 RYSEF*LVFKM 560
Y L+ K+
Sbjct: 283 LYEAMALLSKL 293
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 372 VQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEG 497
+ S V D +G SK YGF+ F A A Q H +EG
Sbjct: 88 LMSKENVKDLKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEG 129
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
L+VGNL + + LR F +FG V + + G Y F++FA AA A
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIK-RPARGQGNTYAFVKFADLDVAAKA 293
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+++G + +L + G ++ R+ D +TGL+KG+ F F ++A A
Sbjct: 155 VFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQA 210
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
R+Y+G L + ++++F +G + ++ L GYGF+EF A DA
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREII------LKDGYGFVEFDYSDDAEDA 54
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 315 LAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
L + ++ ++F+ V + + G + G GF+EFASP A A K
Sbjct: 45 LPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEFASPEIAGQAMQK 98
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
R+Y+G L + +R +F +G + R L YGF+EF A DA
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRL--------RDINLKNNYGFVEFEDDRDADDA 52
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 342 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNL 506
+R+ FS+FG + + ++ L++GY F+EF S A+DA + + T G+ L
Sbjct: 94 IRKVFSKFGQIVTEHYPMEKD--LTRGYIFLEF---SNASDAV-RAVKTANGYKL 142
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 399 RSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLRFNCKIIRYSE 539
R L +GYGF+EF A DA +H L G +L ++ +S+
Sbjct: 716 RDISLKRGYGFVEFDDHRDAEDA----VHDLNGRDLIGERVVVEFSK 758
>SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)
Length = 378
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 331 PTVQA-RLPTYRRAALAVLAITYNDTIPTGVRS 236
P V A R+P YR+A A+L +T N +P+ S
Sbjct: 344 PIVYALRVPKYRKAIKAILGVTRNVVLPSSAES 376
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +3
Query: 285 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 464
+R+ R+Y G L R L ++ +G V R + GYGF+EF A D
Sbjct: 2 SRSTRVYFGRLPRDCRERDLEKFVRGYGRV--------REISMKLGYGFVEFDDYRDADD 53
Query: 465 ATNKQIHTLEGFNL 506
++ L G NL
Sbjct: 54 C----VYDLNGRNL 63
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 387 VVFDRSTGLSKGYGFIEFASPSAAADA 467
VV+DR T S+ +G++ F AADA
Sbjct: 7 VVYDRETRRSRNFGYVTFRDEQDAADA 33
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
+R+Y+GN+ R++ F FGP++ V + G+ F F A DA
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARN-----PPGFAFCVFEDRRDAEDAVR 56
Query: 474 K 476
+
Sbjct: 57 E 57
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3
Query: 342 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 464
L+E ++ + R+V ++ G ++G+GF+EF +P AA +
Sbjct: 348 LQELYAAEVAFRDVRIVRNK-IGYTRGFGFVEFDTPEAAKE 387
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 369 PVQSARVVFDRSTGLSKGYGFIEFAS 446
P+ R++ D+ TG S+G+ F+E A+
Sbjct: 435 PIYDIRLIKDKVTGTSRGFCFVELAT 460
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
+Y+ + + L F +G ++ ++ + TG SKG+G++ + + +A A
Sbjct: 65 IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQ-TGKSKGFGYVTYENAESAQRAL-AG 122
Query: 480 IHTLEG 497
H ++G
Sbjct: 123 THIIDG 128
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVF---DRSTGLSKGYGFIEFASPSAAADA 467
+L++GNL + + + QFG ++ + +F + G +GY F+EF A A
Sbjct: 388 KLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKA 447
>SB_52296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 53 WSAKEVCFPRKILYKRRHSRNAAQTGLLKLY*RSGDSK 166
W A VC +++ R +++ A T +Y R GD K
Sbjct: 181 WPAPVVCSRHHVIHLSRAAKSCAPTSPTSIYERHGDKK 218
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 334 IDNYENISHNLVQCRVQE*YSIDQRASARATVSLNLLVPQLQLMQLISR 480
+DN + N + C V E YS +RA AR + L L + Q+ +
Sbjct: 3890 LDNLSDEDRNSIGCSVTEIYSQLERAKARNALVLQTLDEMIHARQMFKQ 3938
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = +3
Query: 285 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 464
+R +L+VG L+ R L F +G + L YGFIE+ P A +
Sbjct: 3 SRGTQLFVGRLSKETKLRDLENVFYLYGKLLRC--------DLKTAYGFIEYEDPRDAEE 54
Query: 465 ATNKQIHTLEGFNLRFNCKIIRYSE 539
A ++ + + F R + +R E
Sbjct: 55 AMRRE-NNRKLFGSRIVVEYVRSGE 78
>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 324 TVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGF 431
TV ++ EY S G A ++ D+ TG++ GF
Sbjct: 37 TVALKKADEYLSVHGDKADASIIHDKETGITTKIGF 72
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFD 398
L V L+ R LR F ++GPV++ ++V+D
Sbjct: 183 LGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYD 215
>SB_20919| Best HMM Match : WSC (HMM E-Value=1.1e-12)
Length = 531
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 272 YGQYGKSSPPVCRQPCLDS 328
YG+YGK+ C +PC D+
Sbjct: 448 YGRYGKADEASCDKPCKDN 466
>SB_2275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 309 GNLAWTVGHRQLREYFSQFGPVQS 380
GN+ + QL+E FS+ GPV S
Sbjct: 2 GNIPYEASEEQLKEIFSEVGPVIS 25
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,719
Number of Sequences: 59808
Number of extensions: 346947
Number of successful extensions: 847
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -