Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0993.Seq
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 60 1e-09
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 60 1e-09
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 59 3e-09
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 59 3e-09
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 59 3e-09
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 55 3e-08
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 54 9e-08
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 54 9e-08
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 53 2e-07
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 52 2e-07
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 52 4e-07
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 52 4e-07
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 52 4e-07
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 52 4e-07
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 52 4e-07
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 52 4e-07
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 51 5e-07
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 51 5e-07
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 51 7e-07
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 50 9e-07
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 50 9e-07
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 49 2e-06
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 48 4e-06
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 48 6e-06
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 48 6e-06
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 48 6e-06
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 48 6e-06
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 48 6e-06
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 47 8e-06
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 46 1e-05
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 46 1e-05
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 46 1e-05
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 45 4e-05
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 45 4e-05
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 45 4e-05
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 45 4e-05
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 45 4e-05
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 44 8e-05
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 44 8e-05
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 44 1e-04
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 44 1e-04
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 43 1e-04
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 43 1e-04
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 43 1e-04
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 43 1e-04
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 42 3e-04
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 42 3e-04
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 40 0.001
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 40 0.001
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 40 0.002
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 40 0.002
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 40 0.002
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 39 0.003
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 39 0.003
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 39 0.003
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 38 0.004
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 38 0.004
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 38 0.005
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 38 0.005
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 38 0.005
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 38 0.005
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 38 0.005
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 38 0.005
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 38 0.007
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 36 0.015
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 36 0.020
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 36 0.027
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 35 0.047
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 35 0.047
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 32 0.33
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 32 0.33
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 32 0.33
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 31 0.44
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 31 0.44
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 30 1.0
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 30 1.0
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 30 1.3
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z68160-1|CAA92294.2| 489|Caenorhabditis elegans Hypothetical pr... 29 2.3
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 28 4.1
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 28 4.1
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 28 4.1
U00035-8|ABL01530.1| 96|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 27 7.1
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 59.7 bits (138), Expect = 1e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
++++G L+W LR+YF +FG V V+ D +T ++G+GFI F PS+ N
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 477 QIHTLEG 497
+ H L+G
Sbjct: 106 REHELDG 112
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ ++++G L+ T +++YF +G V+ A ++FD++T +G+GF+ F S A
Sbjct: 132 KTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKV 191
Query: 468 TNKQIHTLEG 497
H + G
Sbjct: 192 CEIHFHEING 201
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 59.7 bits (138), Expect = 1e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
++++G L+W LR+YF +FG V V+ D +T ++G+GFI F PS+ N
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 477 QIHTLEG 497
+ H L+G
Sbjct: 106 REHELDG 112
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ ++++G L+ T +++YF +G V+ A ++FD++T +G+GF+ F S A
Sbjct: 132 KTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKV 191
Query: 468 TNKQIHTLEG 497
H + G
Sbjct: 192 CEIHFHEING 201
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S + +L++G L+ QL YFSQ+GPV A V+ D +T S+G+GF+ FAS +A
Sbjct: 44 SPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSA 103
Query: 459 ADATNKQIHTLEG 497
A N + H L G
Sbjct: 104 ESAMNDRPHKLGG 116
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S + +L++G L+ QL YFSQ+GPV A V+ D +T S+G+GF+ FAS +A
Sbjct: 64 SPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSA 123
Query: 459 ADATNKQIHTLEG 497
A N + H L G
Sbjct: 124 ESAMNDRPHKLGG 136
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S + +L++G L+ QL YFSQ+GPV A V+ D +T S+G+GF+ FAS +A
Sbjct: 65 SPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSA 124
Query: 459 ADATNKQIHTLEG 497
A N + H L G
Sbjct: 125 ESAMNDRPHKLGG 137
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
+Y+ ++ W G QL YF ++G +QS + +D TGL +G+ I F S A A ++
Sbjct: 27 VYLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQR 86
Query: 480 IHTLEG 497
H ++G
Sbjct: 87 PHVIDG 92
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 53.6 bits (123), Expect = 9e-08
Identities = 29/69 (42%), Positives = 39/69 (56%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
++VGN+++ V +R FS+ G V S ++V DR TG KGYGFIEF A A
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVA---- 75
Query: 480 IHTLEGFNL 506
I L G+ L
Sbjct: 76 IRNLNGYEL 84
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 53.6 bits (123), Expect = 9e-08
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
+YVGN+ + ++ YF+ G V + R+V+DR TG +G+ F+EF S A A +Q
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEF-SEEAGAQRAVEQ 66
Query: 480 IH--TLEGFNLRFN 515
++ G NLR N
Sbjct: 67 LNGVAFNGRNLRVN 80
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
+T + LY+ L LRE S++G + S + + D++T KGYGF++F SP AA
Sbjct: 102 TTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAA 161
Query: 459 ADATN 473
A A +
Sbjct: 162 AAAVD 166
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+++VG L + + L EYF QFG ++ A V+ DR+T S+GYGF+ ++A A
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 477 QIHTLEGFNLRFN 515
++G N
Sbjct: 96 PNPIIDGRKANVN 108
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+YVGN + L YFSQ G V + R+V DR TG +G+ F+EF +AA A ++
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 461
T R ++VG+L+ V +++LRE F FG V A+V+ D +T SKGYGF+ + A
Sbjct: 18 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 77
Query: 462 DA 467
A
Sbjct: 78 RA 79
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+YVGN+A ++ ++R+ F+ FG + R+ +GY F++F + AAA A
Sbjct: 130 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKA 178
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 461
T R ++VG+L+ V +++LRE F FG V A+V+ D +T SKGYGF+ + A
Sbjct: 28 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 87
Query: 462 DA 467
A
Sbjct: 88 RA 89
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+YVGN+A ++ ++R+ F+ FG + R+ +GY F++F + AAA A
Sbjct: 140 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKA 188
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 461
T R ++VG+L+ V +++LRE F FG V A+V+ D +T SKGYGF+ + A
Sbjct: 131 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 190
Query: 462 DA 467
A
Sbjct: 191 RA 192
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
LYVGNL TV + F+Q G V +V+FD G + Y F+EF+ A+ A
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQA 100
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+YVGN+A ++ ++R+ F+ FG + R+ +GY F++F + AAA A
Sbjct: 243 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKA 291
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 461
T R ++VG+L+ V +++LRE F FG V A+V+ D +T SKGYGF+ + A
Sbjct: 99 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 158
Query: 462 DA 467
A
Sbjct: 159 RA 160
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+YVGN+A ++ ++R+ F+ FG + R+ +GY F++F + AAA A
Sbjct: 211 VYVGNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKA 259
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFD 398
LYVGNL TV + F+Q G V +V+FD
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD 80
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
+R+YVG++++ + LR F FGP++S + +D +TG K + F+E+ P AA A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 474 KQI-HTLEGFNLRFN 515
L G NL+ N
Sbjct: 162 SMNGQMLGGRNLKVN 176
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
R+YV ++ + L+ F FG + ++ + +G+G++EF + ++ ++A
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEA 264
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
+R+YVG++++ + LR F FGP++S + +D +TG K + F+E+ P AA A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 474 KQI-HTLEGFNLRFN 515
L G NL+ N
Sbjct: 162 SMNGQMLGGRNLKVN 176
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
R+YV ++ + L+ F FG + ++ + +G+G++EF + ++ ++A
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEA 264
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
+R+YVG++++ + LR F FGP++S + +D +TG K + F+E+ P AA A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 474 KQI-HTLEGFNLRFN 515
L G NL+ N
Sbjct: 162 SMNGQMLGGRNLKVN 176
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
R+YV ++ + L+ F FG + ++ + +G+G++EF + ++ ++A
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEA 264
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+YVGN + +L +FS G + + R+V DR TG +G+ FIEFA +A A +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
+ LY+ L LRE S++G + S + + D++T KGYGF++F SP AAA A
Sbjct: 80 STNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAV 139
Query: 471 N 473
+
Sbjct: 140 D 140
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 50.8 bits (116), Expect = 7e-07
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFS-QFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
++VGNL + + L +FS Q GPV++ R+V D+ TG KG+ F+ F S+ + A +
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLALSM 307
Query: 477 QIHTLEGFNLR 509
+ +E +LR
Sbjct: 308 ETIKMEKRDLR 318
Score = 31.9 bits (69), Expect = 0.33
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 276 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARV 389
++ A ++VGN+ T+ + +R FS FG + S R+
Sbjct: 137 SAAENALTVFVGNMPLTMNEKSVRRIFSDFGTISSVRM 174
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/67 (31%), Positives = 40/67 (59%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+++VG ++ V + L +F+Q+G V A+V +DR+ G S+G+ F+EF + A
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 477 QIHTLEG 497
+ T++G
Sbjct: 90 REQTIKG 96
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 276 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 455
A + +++VG L + LR +F QFG V FD+ T + + FI F +
Sbjct: 104 AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEES 163
Query: 456 AADATNKQIHT 488
A A+++ T
Sbjct: 164 ADKASSQTKQT 174
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/67 (31%), Positives = 40/67 (59%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+++VG ++ V + L +F+Q+G V A+V +DR+ G S+G+ F+EF + A
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 477 QIHTLEG 497
+ T++G
Sbjct: 90 REQTIKG 96
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 276 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 455
A + +++VG L + LR +F QFG V FD+ T + + FI F +
Sbjct: 104 AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEES 163
Query: 456 AADATNKQIHT 488
A A+++ T
Sbjct: 164 ADKASSQTKQT 174
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 461
T++ ++VG+L+ V + L+ F++FG V A+V+ D T SKGYGF+ F + A
Sbjct: 131 TSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAE 190
Query: 462 DA 467
+A
Sbjct: 191 NA 192
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARV 389
+YVGN++ LR+ FS +G + R+
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRI 268
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
T+R ++VG+L + +LRE F +FG V A+++ D +T KGYGF+ +
Sbjct: 128 TSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSY 180
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
L+V NL + L F+Q G V A+++F+ GL+ Y F+EF+ + A
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQA 91
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ LYV N+ + LR++FS FG + SA+V+ D + G SKG+GF+ F P A A
Sbjct: 341 QGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAA 399
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/63 (41%), Positives = 34/63 (53%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
+T A LY+G+L V L E FS GPV S RV D ++ LS GY ++ F P+ A
Sbjct: 52 ATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADA 111
Query: 459 ADA 467
A
Sbjct: 112 ERA 114
Score = 44.0 bits (99), Expect = 8e-05
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S + ++V N + +L FS+FG + SA V+ D + G KG+GF+ FA AA
Sbjct: 233 SGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAA 291
Query: 459 ADATNK-QIHTLEGFNLRFN-CKIIRYSE 539
A K LEG + + + C+ + SE
Sbjct: 292 GQAVEKLNDSILEGTDCKLSVCRAQKKSE 320
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +3
Query: 276 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 455
A A +++ NL + ++ + + FS FG + S +V D G SKGYGF+ F + +
Sbjct: 139 ARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHS 197
Query: 456 AADATNK 476
A A K
Sbjct: 198 AQTAIEK 204
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ LYV N+ + LR++FS FG + SA+V+ D + G SKG+GF+ F P A A
Sbjct: 341 QGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAA 399
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/63 (41%), Positives = 34/63 (53%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
+T A LY+G+L V L E FS GPV S RV D ++ LS GY ++ F P+ A
Sbjct: 52 ATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADA 111
Query: 459 ADA 467
A
Sbjct: 112 ERA 114
Score = 44.0 bits (99), Expect = 8e-05
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S + ++V N + +L FS+FG + SA V+ D + G KG+GF+ FA AA
Sbjct: 233 SGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAA 291
Query: 459 ADATNK-QIHTLEGFNLRFN-CKIIRYSE 539
A K LEG + + + C+ + SE
Sbjct: 292 GQAVEKLNDSILEGTDCKLSVCRAQKKSE 320
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +3
Query: 276 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 455
A A +++ NL + ++ + + FS FG + S +V D G SKGYGF+ F + +
Sbjct: 139 ARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHS 197
Query: 456 AADATNK 476
A A K
Sbjct: 198 AQTAIEK 204
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
L V NL+ + LR+ F +FG + +V+DR +G S+G+GFI F A A +K
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKL 137
Query: 480 IHT-LEGFNLRFNCKIIR 530
+T L+G +R + + +
Sbjct: 138 CNTDLDGHKIRVDFSLTK 155
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/63 (44%), Positives = 34/63 (53%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S+ A LYVG+L V L E FS GPV S RV D +T LS GY ++ F P+ A
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 459 ADA 467
A
Sbjct: 87 ERA 89
Score = 47.6 bits (108), Expect = 6e-06
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++ NL + ++ + + FS FG + S +V D G SKGYGF+ F + AA +A
Sbjct: 119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAI 177
Query: 471 NK 476
K
Sbjct: 178 QK 179
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ LYV NL TV L++ F +G + SA+V+ D + G SKG+GF+ F P A A
Sbjct: 315 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSA 373
Query: 468 TNK 476
+
Sbjct: 374 VTE 376
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +3
Query: 273 MASTARA-ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 449
+ TA+ +YV N L + F++FG + S V+ G SKG+GF+ FA+P
Sbjct: 205 LGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVM--TVEGKSKGFGFVAFANP 262
Query: 450 SAAADATNKQIH--TLEGFNLRFN-CKIIRYSE 539
A A + +H T+EG +L+ + C+ + SE
Sbjct: 263 EEAETAV-QALHDSTIEGTDLKLHVCRAQKKSE 294
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/63 (44%), Positives = 34/63 (53%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S+ A LYVG+L V L E FS GPV S RV D +T LS GY ++ F P+ A
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 459 ADA 467
A
Sbjct: 87 ERA 89
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ LYV NL TV L++ F +G + SA+V+ D + G SKG+GF+ F P A A
Sbjct: 255 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSA 313
Query: 468 TNK 476
+
Sbjct: 314 VTE 316
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +3
Query: 273 MASTARA-ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 449
+ TA+ +YV N L + F++FG + S V+ G SKG+GF+ FA+P
Sbjct: 145 LGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANP 202
Query: 450 SAAADATNKQIH--TLEGFNLRFN-CKIIRYSE 539
A A + +H T+EG +L+ + C+ + SE
Sbjct: 203 EEAETAV-QALHDSTIEGTDLKLHVCRAQKKSE 234
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 47.6 bits (108), Expect = 6e-06
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++ NL + ++ + + FS FG + S +V D G SKGYGF+ F + AA +A
Sbjct: 56 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAI 114
Query: 471 NK 476
K
Sbjct: 115 QK 116
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ LYV NL TV L++ F +G + SA+V+ D + G SKG+GF+ F P A A
Sbjct: 252 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSA 310
Query: 468 TNK 476
+
Sbjct: 311 VTE 313
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +3
Query: 273 MASTARA-ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 449
+ TA+ +YV N L + F++FG + S V+ G SKG+GF+ FA+P
Sbjct: 142 LGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANP 199
Query: 450 SAAADATNKQIH--TLEGFNLRFN-CKIIRYSE 539
A A + +H T+EG +L+ + C+ + SE
Sbjct: 200 EEAETAV-QALHDSTIEGTDLKLHVCRAQKKSE 231
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/63 (44%), Positives = 34/63 (53%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S+ A LYVG+L V L E FS GPV S RV D +T LS GY ++ F P+ A
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 459 ADA 467
A
Sbjct: 87 ERA 89
Score = 47.6 bits (108), Expect = 6e-06
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++ NL + ++ + + FS FG + S +V D G SKGYGF+ F + AA +A
Sbjct: 119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAI 177
Query: 471 NK 476
K
Sbjct: 178 QK 179
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ LYV NL TV L++ F +G + SA+V+ D + G SKG+GF+ F P A A
Sbjct: 315 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSA 373
Query: 468 TNK 476
+
Sbjct: 374 VTE 376
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +3
Query: 273 MASTARA-ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 449
+ TA+ +YV N L + F++FG + S V+ G SKG+GF+ FA+P
Sbjct: 205 LGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANP 262
Query: 450 SAAADATNKQIH--TLEGFNLRFN-CKIIRYSE 539
A A + +H T+EG +L+ + C+ + SE
Sbjct: 263 EEAETAV-QALHDSTIEGTDLKLHVCRAQKKSE 294
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
RL++ NL + L+ F ++G V +VV D+ TG KG+ +EF P AA A
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAA 336
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLS-KGYGFIEFASPSAAADATN 473
+L V NL + +++ F FG V++ R+ +G+GF++F S A A +
Sbjct: 749 KLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAFD 808
Query: 474 KQIHTLEGFNLR 509
+H+ + R
Sbjct: 809 SLVHSTHLYGRR 820
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+++VG L +RE++SQFG + V+ D +T S+G+GF+ F+ + A +
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 477 QIHTLEG 497
+ H ++G
Sbjct: 84 RPHIIDG 90
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S RLYV + L EYF+++G V + ++ D++T +G+GF+ F +
Sbjct: 109 SNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSV 168
Query: 459 ADATNKQIHTLEG 497
++ H + G
Sbjct: 169 DQCVLQKSHMVNG 181
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+++VG L +RE++SQFG + V+ D +T S+G+GF+ F+ + A +
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 477 QIHTLEG 497
+ H ++G
Sbjct: 84 RPHIIDG 90
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S RLYV + L EYF+++G V + ++ D++T +G+GF+ F +
Sbjct: 109 SNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSV 168
Query: 459 ADATNKQIHTLEG 497
++ H + G
Sbjct: 169 DQCVLQKSHMVNG 181
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+++VG L +RE++SQFG + V+ D +T S+G+GF+ F+ + A +
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 477 QIHTLEG 497
+ H ++G
Sbjct: 84 RPHIIDG 90
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S RLYV + L EYF+++G V + ++ D++T +G+GF+ F +
Sbjct: 109 SNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSV 168
Query: 459 ADATNKQIHTLEG 497
++ H + G
Sbjct: 169 DQCVLQKSHMVNG 181
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+L++G L+ LRE F++FG ++ V+ D+ G S+G F+ F + S A AT +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKE 201
Query: 477 QIH--TLEG 497
H T+EG
Sbjct: 202 MHHSQTMEG 210
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
A L++ +L G L F+ FG + SA+V D+ T LSK +GF+ + + +A +A
Sbjct: 499 ANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA-- 556
Query: 474 KQIHTLEGFNL 506
I + GF +
Sbjct: 557 --ISAMNGFQI 565
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++VG + R F ++G V S ++ D+ST SKG F+ F A +A
Sbjct: 54 AIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQ 113
Query: 471 N--KQIHTLEGFN 503
I +EG +
Sbjct: 114 GALHNIKVIEGMH 126
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+L++G L+ LRE F++FG ++ V+ D+ G S+G F+ F + S A AT +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKE 201
Query: 477 QIH--TLEG 497
H T+EG
Sbjct: 202 MHHSQTMEG 210
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
A L++ +L G L F+ FG + SA+V D+ T LSK +GF+ + + +A +A
Sbjct: 499 ANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA-- 556
Query: 474 KQIHTLEGFNL 506
I + GF +
Sbjct: 557 --ISAMNGFQI 565
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++VG + R F ++G V S ++ D+ST SKG F+ F A +A
Sbjct: 54 AIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQ 113
Query: 471 N--KQIHTLEGFN 503
I +EG +
Sbjct: 114 GALHNIKVIEGMH 126
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+L++G L+ LRE F++FG ++ V+ D+ G S+G F+ F + S A AT +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKE 201
Query: 477 QIH--TLEG 497
H T+EG
Sbjct: 202 MHHSQTMEG 210
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
A L++ +L G L F+ FG + SA+V D+ T LSK +GF+ + + +A +A
Sbjct: 428 ANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA-- 485
Query: 474 KQIHTLEGFNL 506
I + GF +
Sbjct: 486 --ISAMNGFQI 494
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++VG + R F ++G V S ++ D+ST SKG F+ F A +A
Sbjct: 54 AIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQ 113
Query: 471 N--KQIHTLEGFN 503
I +EG +
Sbjct: 114 GALHNIKVIEGMH 126
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+L++G L+ LRE F++FG ++ V+ D+ G S+G F+ F + S A AT +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKE 201
Query: 477 QIH--TLEG 497
H T+EG
Sbjct: 202 MHHSQTMEG 210
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++VG + R F ++G V S ++ D+ST SKG F+ F A +A
Sbjct: 54 AIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQ 113
Query: 471 N--KQIHTLEGFN 503
I +EG +
Sbjct: 114 GALHNIKVIEGMH 126
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+L++G L+ LRE F++FG ++ V+ D+ G S+G F+ F + S A AT +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKE 201
Query: 477 QIH--TLEG 497
H T+EG
Sbjct: 202 MHHSQTMEG 210
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
A L++ +L G L F+ FG + SA+V D+ T LSK +GF+ + + +A +A
Sbjct: 499 ANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA-- 556
Query: 474 KQIHTLEGFNL 506
I + GF +
Sbjct: 557 --ISAMNGFQI 565
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++VG + R F ++G V S ++ D+ST SKG F+ F A +A
Sbjct: 54 AIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQ 113
Query: 471 N--KQIHTLEGFN 503
I +EG +
Sbjct: 114 GALHNIKVIEGMH 126
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA--AD 464
A +L+VG + + + LR F QFG + ++ D+ TG+ KG F+ + +A
Sbjct: 28 AIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQ 87
Query: 465 ATNKQIHTLEGFNLRFNCK 521
AT TL G N K
Sbjct: 88 ATLHDQKTLPGMNRAMQVK 106
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF---ASPSAAADAT 470
L++ +L G +L + F+ FG + SA+V DR+T SK +GF+ + S AA A
Sbjct: 431 LFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAM 490
Query: 471 N 473
N
Sbjct: 491 N 491
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA--AD 464
A +L+VG + + + LR F QFG + ++ D+ TG+ KG F+ + +A
Sbjct: 28 AIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQ 87
Query: 465 ATNKQIHTLEGFNLRFNCK 521
AT TL G N K
Sbjct: 88 ATLHDQKTLPGMNRAMQVK 106
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF---ASPSAAADAT 470
L++ +L G +L + F+ FG + SA+V DR+T SK +GF+ + S AA A
Sbjct: 431 LFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAM 490
Query: 471 N 473
N
Sbjct: 491 N 491
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S RLYV + L EYF+++G V + ++ D++T +G+GF+ F +
Sbjct: 71 SNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSV 130
Query: 459 ADATNKQIHTLEG 497
++ H + G
Sbjct: 131 DQCVLQKSHMVNG 143
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +3
Query: 342 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEG 497
+RE++SQFG + V+ D +T S+G+GF+ F+ + A ++ H ++G
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDG 52
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 279 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 458
S RLYV + L EYF+++G V + ++ D++T +G+GF+ F +
Sbjct: 71 SNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSV 130
Query: 459 ADATNKQIHTLEG 497
++ H + G
Sbjct: 131 DQCVLQKSHMVNG 143
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +3
Query: 342 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEG 497
+RE++SQFG + V+ D +T S+G+GF+ F+ + A ++ H ++G
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDG 52
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPV-QSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A ++VGNL V + L + FS FG + Q +++ D +G SKG+ FI FAS A+ A
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA- 158
Query: 471 NKQIHTLEGFNLRFNC 518
LE N +F C
Sbjct: 159 ------LEAMNGQFLC 168
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
A +YVG L V L E Q GPV S + DR T +G+GF+EF
Sbjct: 13 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 61
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+ + LYV + ++ +L F FG + ++R++ D TGLSKG GF+ F D
Sbjct: 126 KGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDK----KDE 181
Query: 468 TNKQIHTLEG 497
+ I TL G
Sbjct: 182 ADVAIKTLNG 191
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 473
A L++ +L G L F+ FG + SA+V D+ T LSK +GF+ + + +A +A
Sbjct: 335 ANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA-- 392
Query: 474 KQIHTLEGFNL 506
I + GF +
Sbjct: 393 --ISAMNGFQI 401
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPV-QSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A ++VGNL V + L + FS FG + Q +++ D +G SKG+ FI FAS A+ A
Sbjct: 110 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA- 168
Query: 471 NKQIHTLEGFNLRFNC 518
LE N +F C
Sbjct: 169 ------LEAMNGQFLC 178
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
A +YVG L V L E Q GPV S + DR T +G+GF+EF
Sbjct: 23 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 71
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
+L++G L+ LRE F++FG ++ V+ D+ G S+G F+ F + S A AT +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKE 201
Query: 477 QIHT 488
H+
Sbjct: 202 MHHS 205
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++VG + R F ++G V S ++ D+ST SKG F+ F A +A
Sbjct: 54 AIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQ 113
Query: 471 N--KQIHTLEGFN 503
I +EG +
Sbjct: 114 GALHNIKVIEGMH 126
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
RL+V N+ + L+ F +FG V ++F+ SKG+GF+ P A+ +
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQ-DAERARQ 210
Query: 477 QIH--TLEGFNLRFNCKIIR 530
++H +EG + NC R
Sbjct: 211 ELHGSMIEGRKIEVNCATAR 230
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
RL+V N+ + L+ F +FG V ++F+ SKG+GF+ P A+ +
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQ-DAERARQ 210
Query: 477 QIH--TLEGFNLRFNCKIIR 530
++H +EG + NC R
Sbjct: 211 ELHGSMIEGRKIEVNCATAR 230
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI 434
+A +Y+G L++ + + FSQ+G V + ++ D+ TG SKG+ F+
Sbjct: 37 SAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFL 84
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 288 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF-ASPSAAAD 464
R LYVG V + L F FG V + + D +G +G+GF+EF + AA
Sbjct: 9 RKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMA 68
Query: 465 ATNKQIHTLEGFNLRFN 515
N L G +R N
Sbjct: 69 IDNMNESELFGKTIRVN 85
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
A +YVGN+ W ++ E+F+ G V + D+ TG K + F+EF
Sbjct: 45 ARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEF 94
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/83 (31%), Positives = 38/83 (45%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
AAR+Y+G L V + + +F +G + R L G+GF+EF A DA
Sbjct: 2 AARIYIGRLTSRVSEKDIEHFFRGYGQI--------RDVLLKNGFGFVEFDDKRDAEDA- 52
Query: 471 NKQIHTLEGFNLRFNCKIIRYSE 539
+H L G L I+ YS+
Sbjct: 53 ---VHDLNGKELGGERVILDYSK 72
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/83 (31%), Positives = 38/83 (45%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
AAR+Y+G L V + + +F +G + R L G+GF+EF A DA
Sbjct: 2 AARIYIGRLTSRVSEKDIEHFFRGYGQI--------RDVLLKNGFGFVEFDDKRDAEDA- 52
Query: 471 NKQIHTLEGFNLRFNCKIIRYSE 539
+H L G L I+ YS+
Sbjct: 53 ---VHDLNGKELGGERVILDYSK 72
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/83 (31%), Positives = 38/83 (45%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
AAR+Y+G L V + + +F +G + R L G+GF+EF A DA
Sbjct: 2 AARIYIGRLTSRVSEKDIEHFFRGYGQI--------RDVLLKNGFGFVEFDDKRDAEDA- 52
Query: 471 NKQIHTLEGFNLRFNCKIIRYSE 539
+H L G L I+ YS+
Sbjct: 53 ---VHDLNGKELGGERVILDYSK 72
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 464
R++VG + +LRE+F +F V+ ++V G SKGYGFI F + A +
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDVKMV-KSLDGQSKGYGFITFETEDQAEE 121
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 464
R++VG + +LRE+F +F V+ ++V G SKGYGFI F + A +
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMV-KSLDGQSKGYGFITFETEDQAEE 122
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +3
Query: 285 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 464
A A +YVGN+ + ++ ++F G V + DR +G KG+ ++EF +
Sbjct: 75 ADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQN 134
Query: 465 ATNKQIHTLEGFNLRFNCK 521
A L G ++ + K
Sbjct: 135 ALAMTDSLLRGRQIKVDPK 153
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
L + +A R L E+FS G V+ R++ D TG SKG ++EF
Sbjct: 27 LLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 73
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
L + +A R L E+FS G V+ R++ D TG SKG ++EF
Sbjct: 172 LLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 218
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 276 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 455
+ST RL+V N+ + L F + GPV ++F+ SKG+GF+ +P
Sbjct: 94 SSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG--SKGFGFVTMQNPD- 150
Query: 456 AADATNKQIH--TLEGFNLRFN 515
AD + + T+EG + N
Sbjct: 151 DADRARAEFNGTTIEGRRVEVN 172
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
++V N+ + + FS++G +++ + DR TG KGY +E+ + A +A ++
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 480 IHT-LEGFNLR 509
T L G N++
Sbjct: 117 NDTDLLGQNVK 127
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 276 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 455
+ST RL+V N+ + L F + GPV ++F+ SKG+GF+ +P
Sbjct: 94 SSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG--SKGFGFVTMQNPD- 150
Query: 456 AADATNKQIH--TLEGFNLRFN 515
AD + + T+EG + N
Sbjct: 151 DADRARAEFNGTTIEGRRVEVN 172
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 336 RQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLRFN 515
++L YF QFG V RV +R TG KG+ ++ F + A A+ + ++ F R
Sbjct: 46 KELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDN-KAVAEIAAESMNGYLMFEQRLG 104
Query: 516 CKIIR 530
C +++
Sbjct: 105 CTVMK 109
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A ++++G L + Q++E FGP+++ + D S G SKGY F E+ P+ T
Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPT----LT 344
Query: 471 NKQIHTLEGFNL 506
++ I L G L
Sbjct: 345 DQAIAGLNGMQL 356
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQ----FGPVQS-ARVVFDRSTGLSKGYGFIEFAS 446
T ++ RLYVGN+ + + ++F+Q G Q+ + L K + FIEF S
Sbjct: 180 TCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRS 239
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A ++++G L + Q++E FGP+++ + D S G SKGY F E+ P+ T
Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPT----LT 344
Query: 471 NKQIHTLEGFNL 506
++ I L G L
Sbjct: 345 DQAIAGLNGMQL 356
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQ----FGPVQS-ARVVFDRSTGLSKGYGFIEFAS 446
T ++ RLYVGN+ + + ++F+Q G Q+ + L K + FIEF S
Sbjct: 180 TCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRS 239
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A ++++G L + Q++E FGP+++ + D S G SKGY F E+ P+ T
Sbjct: 265 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPT----LT 319
Query: 471 NKQIHTLEGFNL 506
++ I L G L
Sbjct: 320 DQAIAGLNGMQL 331
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQ----FGPVQS-ARVVFDRSTGLSKGYGFIEFAS 446
T ++ RLYVGN+ + + ++F+Q G Q+ + L K + FIEF S
Sbjct: 155 TCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRS 214
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A ++++G L + Q++E FGP+++ + D S G SKGY F E+ P+ T
Sbjct: 268 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPT----LT 322
Query: 471 NKQIHTLEGFNL 506
++ I L G L
Sbjct: 323 DQAIAGLNGMQL 334
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 282 TARAARLYVGNLAWTVGHRQLREYFSQ----FGPVQS-ARVVFDRSTGLSKGYGFIEFAS 446
T ++ RLYVGN+ + + ++F+Q G Q+ + L K + FIEF S
Sbjct: 158 TCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRS 217
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
R++ G+L V L + F ++ Q A+VV + T SKGYGF+ F
Sbjct: 204 RVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSF 251
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 306 VGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
V NL + +LR+ F + G V + D+ TGL KG+ F+ F S AA A
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARA 233
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 36.3 bits (80), Expect = 0.015
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS-PSAAADATNK 476
+YVG++ V L F + G + R++ D +G S+GY F+ + + AAA A
Sbjct: 202 IYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTY 261
Query: 477 QIHTLE-GFNLRFNCKI 524
H + G L+ N I
Sbjct: 262 DGHEISTGKPLKVNVSI 278
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 470
A +++VG + R F ++G V S ++ D+ST SKG F+ F A +A
Sbjct: 54 AIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQ 113
Query: 471 N--KQIHTLEGFN 503
I +EG +
Sbjct: 114 GALHNIKVIEGMH 126
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKG 422
+L++G L+ LRE F++FG ++ V+ D+ G S+G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRG 183
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 35.5 bits (78), Expect = 0.027
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
L+V L L FS+FG + + +V DR +G S Y FIEF + + A K
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 480 IHTL 491
+ L
Sbjct: 303 DNVL 306
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 464
+++ NL++ ++E S+FG + A + + +G SKG F+ F++P A++
Sbjct: 265 VFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASN 319
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 35.5 bits (78), Expect = 0.027
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
L+V L L FS+FG + + +V DR +G S Y FIEF + + A K
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 480 IHTL 491
+ L
Sbjct: 303 DNVL 306
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 35.5 bits (78), Expect = 0.027
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
L+V L L FS+FG + + +V DR +G S Y FIEF + + A K
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 233
Query: 480 IHTL 491
+ L
Sbjct: 234 DNVL 237
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 34.7 bits (76), Expect = 0.047
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
L + NL++ LR F ++G + + D+ + SKG+GF+ F A A ++
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 34.7 bits (76), Expect = 0.047
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 476
L + NL++ LR F ++G + + D+ + SKG+GF+ F A A ++
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 440
LYVGNL++ Q+ E F + G V+ + DR G+ F+E+
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEY 85
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
++YVGNL V +++ + F ++G ++ D +G + F+EF A DA
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIK----YVDIKSGRGPAFAFVEFEDHRDAEDA 62
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 297 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
++YVGNL V +++ + F ++G ++ D +G + F+EF A DA
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIK----YVDIKSGRGPAFAFVEFEDHRDAEDA 62
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFD 398
LYVGNL TV + F+Q G V +V+FD
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD 80
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
A +++GN+ + ++ E+F G + + D+ T K + +IEF S+ +A
Sbjct: 54 AKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENA 112
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 327 VGHRQLREYFSQF-GPVQSARVVFDRSTGLSKGYGFIE----FASPSAAADATNKQIHTL 491
+GHR L YF Q+ PV + + R+ L K GF + + AA + + +
Sbjct: 288 IGHRNLHRYFKQYLRPVDGTQRLVSRA-ALDKAKGFYPALAWTGTTTVAAKKVARDMKFV 346
Query: 492 EGFNLRFNCKI 524
E F RF+ ++
Sbjct: 347 ERFRRRFDLRV 357
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 291 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
A +++GN+ + ++ E+F G + + D+ T K + +IEF S+ +A
Sbjct: 60 AKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENA 118
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 479
LY+ NL + + ++ E F +FG V+ RV +T ++G F+ + DA
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRV---GNTAETRGTAFVVYED---IFDAKTAC 74
Query: 480 IHTLEGFNLRFNCKIIRY 533
H L G+N+ ++ Y
Sbjct: 75 EH-LSGYNVSNRYLVVLY 91
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 354 FSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIH--TLEGFNLRFN 515
F + GPV ++F+ SKG+GF+ +P AD + + T+EG + N
Sbjct: 2 FEKVGPVVDVEIIFNERG--SKGFGFVTMQNPD-DADRARAEFNGTTIEGRRVEVN 54
>Z68160-1|CAA92294.2| 489|Caenorhabditis elegans Hypothetical
protein D1046.1 protein.
Length = 489
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +3
Query: 234 TLLTPV-GIVSL*VMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQS--ARVVF--D 398
T+ P GI + +S R YVGNL W L + G +S A + F +
Sbjct: 63 TVTAPTAGIGAKPATSSEGRKYCCYVGNLLWYTTDADLLKALQSTGLARSQFADMKFFEN 122
Query: 399 RSTGLSKGYGFIEFASPSA 455
R+ G SKGY + S +A
Sbjct: 123 RTNGQSKGYALLVLNSDAA 141
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
A++YVG L ++L E F +FG ++ V G+ F+E+ A DA
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWV-----ARRPPGFAFVEYDDVRDAEDA 55
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
A++YVG L ++L E F +FG ++ V G+ F+E+ A DA
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWV-----ARRPPGFAFVEYDDVRDAEDA 55
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
A++YVG L ++L E F +FG ++ V G+ F+E+ A DA
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWV-----ARRPPGFAFVEYDDVRDAEDA 55
>U00035-8|ABL01530.1| 96|Caenorhabditis elegans Hypothetical
protein R01H2.8 protein.
Length = 96
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 539 FRISNYFAIEP*VETFKCVNLLISCISCS 453
FR++ Y P + F C+N+ I C SCS
Sbjct: 56 FRLNIYQDPVPKMADFSCINVCIPCNSCS 84
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 294 ARLYVGNLAWTVGHRQLREYFSQFGP--VQSARVVFDRSTGLSKGYGFIEFASPSAAADA 467
+R++VG L V QLR+ F +++A V +G+ F+ +S AA
Sbjct: 259 SRIFVGRLTDKVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAERI 318
Query: 468 TNKQIHTLEGFNL 506
+K T+ G ++
Sbjct: 319 VSKGSLTVNGLSV 331
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 300 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRS 404
+YV N+ +V L F FGP+ + ++++ RS
Sbjct: 202 VYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRS 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,351,347
Number of Sequences: 27780
Number of extensions: 246624
Number of successful extensions: 770
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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