Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0991.Seq
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   109   3e-25
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   1.5  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    27   2.7  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   6.2  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   6.2  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   8.1  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.1  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  109 bits (262), Expect = 3e-25
 Identities = 49/79 (62%), Positives = 61/79 (77%)
 Frame = +2

Query: 17  MKFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 196
           M+ Q+K+  SFEKRK   ++IR KYPDR+PVI EK  K+ +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 197 YFLIRKRIHLRPEDALFFF 253
            ++IRKRI L PE A+F F
Sbjct: 61  VYVIRKRIKLSPEKAIFIF 79



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +1

Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN*F 372
           F+  + ++PPT+A M ++Y+EH  ED FLYI +S EN +G  F
Sbjct: 77  FIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 181  NSWPVLLLDPETYSPAA*R-RTFLLRNNVIPPTSATMGSLYQEHHDEDFFLYI 336
            NSW  L   P  + P+    R FLLRN+++P T+ +  S Y  +     ++Y+
Sbjct: 1034 NSWTSLR--PVLFGPSEQLPRNFLLRNDIVPNTNNSAWSEYIRNLYPKAYIYL 1084


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 580 TLNQXKDVKTKQSFTCLKSFILFIEDKYSIICQLII 473
           TL    + KT +SFT LK FIL I   +++   ++I
Sbjct: 546 TLTAKSEAKTIRSFTKLKLFILLIAVPFALPMIILI 581


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 369 IPNYSLSNSFTLSDHMVKFNLSLRLKLCIILWYFFIINWHIILYLSSMNSIKLFKQVKDC 548
           IP +++ NS+   D    FN ++ L L  I W+ F     +    S++    LF  +  C
Sbjct: 170 IPWFNIQNSY---DDPNDFNYAIGLYL--ICWFIFTFLVLLCTVRSTLAFFSLFMSLDVC 224

Query: 549 FVFTSLXWL 575
           F+  +  +L
Sbjct: 225 FLLLACAFL 233


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 134 RLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFGTMSFHP 274
           +L +   ++ ++P D+ V +   L+ K   + PED+   F   S HP
Sbjct: 637 KLTNASTEEVMLPLDMVVNE---LLEKSPKVFPEDSRLLFAEQSRHP 680


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -3

Query: 396 NYLKVNNLELISIDIF-VGKC 337
           N  KVN ++LISI++F +G C
Sbjct: 71  NKSKVNEIQLISIEVFIIGIC 91


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 228 GLKTHFSSSEQCHSTHICNNGVSLPRT 308
           GLK   SS++ CH+ H  N  + L  T
Sbjct: 58  GLKALLSSNQLCHAFHYHNKKIRLVDT 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,649
Number of Sequences: 5004
Number of extensions: 49400
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)