Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0991.Seq
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 102 2e-22
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 99 3e-21
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 53 1e-07
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 43 2e-04
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 43 2e-04
06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297... 28 4.8
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 6.3
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313 28 6.3
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 27 8.3
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 102 bits (245), Expect = 2e-22
Identities = 45/78 (57%), Positives = 60/78 (76%)
Frame = +2
Query: 20 KFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 199
K +K H+ E+R+A +IR KY DR+PVIVEKA ++ + D+DKKKYLVP+DLTVGQF
Sbjct: 3 KSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
Query: 200 FLIRKRIHLRPEDALFFF 253
+++RKRI L PE A+F F
Sbjct: 63 YVVRKRIKLSPEKAIFIF 80
Score = 50.8 bits (116), Expect = 8e-07
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
F+ N +PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 78 FIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/75 (58%), Positives = 57/75 (76%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 208
+K H E+R+A +IR KY DR+PVIVEKA K + ++DKKKYLVP+DLTVGQF +++
Sbjct: 170 FKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVV 229
Query: 209 RKRIHLRPEDALFFF 253
RKRI L PE A+F F
Sbjct: 230 RKRIKLSPEKAIFVF 244
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 366
F+ N +PPT++ M ++Y+E+ DED FLY+ +S EN +G+
Sbjct: 242 FVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 282
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +2
Query: 50 EKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 160
E+R+A +IR KYPDR+PVIVEKA ++ + D+DKKK
Sbjct: 1806 ERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKK 1842
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +1
Query: 226 AA*RRTFLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
+A + F+ N +PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 1907 SAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 1952
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = +2
Query: 158 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFF 253
+YLVP+DLTVGQF +++RKRI L E A+F F
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIF 1915
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 363
F+ NN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 233 FVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 363
F+ NN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 47 FVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87
>06_01_0417 -
2972877-2973876,2973946-2974851,2975823-2976616,
2977887-2977977,2978305-2978384
Length = 956
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 249 SSEQCHSTHICNNGVSLPRTP**RFLSIHSIFRRKCLWKLIPNYSLSNSFTLS 407
S E+ ++ +C+NG +L R LSIHS + K N S + SFT+S
Sbjct: 560 SIEENFASFLCDNGSTLASHDKIRRLSIHSSYNSS--QKTSANVSHARSFTMS 610
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 357 LWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCII 458
LW+L+ +SL S + +++SL LK C +
Sbjct: 335 LWELVERHSLEREVFSSFKQIYYDMSLMLKSCFL 368
>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
Length = 739
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/46 (21%), Positives = 24/46 (52%)
Frame = +3
Query: 417 VKFNLSLRLKLCIILWYFFIINWHIILYLSSMNSIKLFKQVKDCFV 554
+K L++ +C+++ F + W +I + S+ L +Q + F+
Sbjct: 350 LKARLAIGAVICVLVGLFSFLGWEVIRHKRSIKKQALLRQTHEFFL 395
>05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 336 SIFRRKCLWKLIPNYSLSNSFTLSDHMVKFN 428
SI+ ++ KLI N+SL+ + + DH + FN
Sbjct: 933 SIYHQQIRPKLISNFSLAWNLYVKDHPIDFN 963
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,621
Number of Sequences: 37544
Number of extensions: 273655
Number of successful extensions: 738
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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