Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0991.Seq
(584 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 156 1e-38
SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 60 2e-09
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4) 29 2.8
SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003) 28 4.9
SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 27 8.5
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1) 27 8.5
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 27 8.5
SB_397| Best HMM Match : MFS_1 (HMM E-Value=0.16) 27 8.5
SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9) 27 8.5
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 27 8.5
SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9) 27 8.5
>SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 119
Score = 156 bits (379), Expect = 1e-38
Identities = 71/79 (89%), Positives = 76/79 (96%)
Frame = +2
Query: 17 MKFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 196
MK++YKE H FEKR+A GEKIR+KYPDRVPVIVEKAPKAR+GDLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWEYKEEHPFEKRRAEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 197 YFLIRKRIHLRPEDALFFF 253
YFLIRKRIHLRPEDALFFF
Sbjct: 61 YFLIRKRIHLRPEDALFFF 79
Score = 77.8 bits (183), Expect = 6e-15
Identities = 33/40 (82%), Positives = 36/40 (90%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
F NNVIPPTSATMG LYQEHH+EDFFLYIA+SDE+VYG
Sbjct: 77 FFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 140
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 205
+K+ SF R+ IR K+P ++PVIVE+ K + L LDK K+LVP +LT+ QF +
Sbjct: 14 FKQRKSFVSRRDEVAGIRAKFPSKIPVIVERYHKEKDLPLLDKTKFLVPQELTMSQFVTI 73
Query: 206 IRKRIHLRPEDALF 247
IR R+ L A +
Sbjct: 74 IRNRMSLSSTQAFY 87
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 247 LLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 366
++ N + S TM LY+E DED FLY+ ++ + ++G+
Sbjct: 89 IVNNKSLASMSMTMAELYREEKDEDGFLYMVYASQEMFGS 128
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 30.7 bits (66), Expect = 0.91
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 98 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFGTMSFHP 274
RV + + + + D K YL P D G+FY L +IH+R ++S HP
Sbjct: 214 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYIL--PKIHIRGPGGTIIISSIS-HP 269
>SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
Length = 736
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = +3
Query: 279 CNNGVSLPRTP**RFLSIHSIFRRKCLWKLIPNYSLSNS----FTLSDHMVKFNLSLRLK 446
C N SLP P + + ++ +++C +Y L + F+ SD + L L
Sbjct: 383 CGNRGSLPPPPPGQLAKLLAVRQKQCEKYPTSHYMLKVAHLQYFSYSDSKINSKLKLNYV 442
Query: 447 LCIILWYFFIINWHIILYLSSMNSIKLFKQVKDCFVF 557
LC+ W + H++ Y+ SM +I F ++ FVF
Sbjct: 443 LCLNTWLSDQFDKHMV-YIVSM-AICYFGRLSS-FVF 476
>SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 95 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 232
+RV + + + + D K YL P D G+FY L + H P
Sbjct: 81 ERVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 126
>SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Frame = +3
Query: 321 FLSIHSIFRRKCLWKLIP--NYSLSNSFTLSD-----HMVKFNLSLRLKLCIILWYFFII 479
F+++H +FR ++ + N +S T D H F ++ +I+ F++
Sbjct: 421 FVNVHILFRNVTVYLQVRKCNQKISREMTDKDSKRSRHKKLFAELKVARVFVIVSILFLL 480
Query: 480 NWHIILYLSSMNSIKLFKQVKDCFVFTSLXWLSV 581
+W ILY++++N++ + D + + L++
Sbjct: 481 SWVPILYVTTVNNLGRRDLIPDVLILLAFYALAL 514
>SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003)
Length = 252
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = +3
Query: 381 SLSNSFTLSDHMVKFNLSLRLKLCIILWYFFIINWHIILYLSSMNSIKLFKQVKDCFVFT 560
+L+N F + V + L++ +I W F+ +W +L ++ ++KL + ++ T
Sbjct: 90 NLTNDFRRQANQVPKSKIKVLRMLVIQWLVFVASWLPLLITMAVQALKLVDFSESLYIAT 149
>SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 98 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 232
RV + + + + D K YL P D G+FY L + H P
Sbjct: 158 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 202
>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 640
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 98 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 232
RV + + + + D K YL P D G+FY L + H P
Sbjct: 77 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 121
>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
Length = 417
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 98 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 232
RV + + + + D K YL P D G+FY L + H P
Sbjct: 34 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 78
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -1
Query: 293 DPIVADVGGMTLFRRRKVRLQAAGEYVS--GSRSRTGQL-LNQTELNTSFCR 147
DP ++ G T + KVRL A + S G++++ GQL Q E+N ++ +
Sbjct: 1697 DPFTSEQGTKTQLGQLKVRLIALDPFTSEQGTKTQLGQLKALQREINKNYSK 1748
>SB_397| Best HMM Match : MFS_1 (HMM E-Value=0.16)
Length = 394
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 98 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 232
RV + + + + D K YL P D G+FY L + H P
Sbjct: 324 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 368
>SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 98 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 232
RV + + + + D K YL P D G+FY L + H P
Sbjct: 232 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 276
>SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
Length = 201
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 98 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 232
RV + + + + D K YL P D G+FY L + H P
Sbjct: 131 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 175
>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 785
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 98 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 232
RV + + + + D K YL P D G+FY L + H P
Sbjct: 450 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 494
>SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
Length = 179
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 98 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 232
RV + + + + D K YL P D G+FY L + H P
Sbjct: 109 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,386,212
Number of Sequences: 59808
Number of extensions: 325487
Number of successful extensions: 801
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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