Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0991.Seq
         (584 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   1.8  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   1.8  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   3.2  
AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    24   3.2  
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    24   3.2  
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    24   3.2  
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    24   3.2  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 272  GGMTLFRRRKVRLQAAGEYVSGSRSRT 192
            GG     R + R Q+AG   SGSRSR+
Sbjct: 1124 GGSRSRSRSRSRSQSAGSRKSGSRSRS 1150


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 375 NYSLSNSFTLSDHMV 419
           N+ +SN++TLSDH V
Sbjct: 183 NWRVSNAYTLSDHRV 197


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 280 ATMGSLYQEHHDEDFFLYIAFSDEN 354
           AT  ++     D+DFF  I+FSD++
Sbjct: 290 ATASAILDTLGDDDFFNLISFSDQS 314


>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 74  KIRRKYPDRVPVIVEKAPKARLGDLDKKKY 163
           KIR +YPDR+       P  ++ D   + Y
Sbjct: 50  KIREEYPDRIMNTYSVVPSPKVSDTVVEPY 79


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 74  KIRRKYPDRVPVIVEKAPKARLGDLDKKKY 163
           KIR +YPDR+       P  ++ D   + Y
Sbjct: 50  KIREEYPDRIMNTYSVVPSPKVSDTVVEPY 79


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 74  KIRRKYPDRVPVIVEKAPKARLGDLDKKKY 163
           KIR +YPDR+       P  ++ D   + Y
Sbjct: 50  KIREEYPDRIMNTYSVVPSPKVSDTVVEPY 79


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 74  KIRRKYPDRVPVIVEKAPKARLGDLDKKKY 163
           KIR +YPDR+       P  ++ D   + Y
Sbjct: 50  KIREEYPDRIMNTYSVVPSPKVSDTVVEPY 79


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,220
Number of Sequences: 2352
Number of extensions: 11601
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55927431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)