Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0991.Seq
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap a... 144 3e-35
AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A recept... 144 3e-35
Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical pr... 60 1e-09
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 1.8
AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna (prolife... 29 2.4
Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical pr... 29 3.2
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical ... 27 7.4
Z81533-6|CAB04339.1| 347|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF022975-3|AAB70674.1| 548|Caenorhabditis elegans Hypothetical ... 27 9.8
AF022975-1|AAB70675.3| 587|Caenorhabditis elegans Hypothetical ... 27 9.8
>U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap and
gate-16 familyprotein 1 protein.
Length = 123
Score = 144 bits (350), Expect = 3e-35
Identities = 66/79 (83%), Positives = 74/79 (93%)
Frame = +2
Query: 17 MKFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 196
MK+ YKE ++FEKR+A G+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 197 YFLIRKRIHLRPEDALFFF 253
YFLIRKRI LRPEDALFFF
Sbjct: 61 YFLIRKRIQLRPEDALFFF 79
Score = 67.3 bits (157), Expect = 7e-12
Identities = 28/40 (70%), Positives = 32/40 (80%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
F NNVIP T TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 77 FFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A
receptor-associated protein protein.
Length = 123
Score = 144 bits (350), Expect = 3e-35
Identities = 66/79 (83%), Positives = 74/79 (93%)
Frame = +2
Query: 17 MKFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 196
MK+ YKE ++FEKR+A G+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 197 YFLIRKRIHLRPEDALFFF 253
YFLIRKRI LRPEDALFFF
Sbjct: 61 YFLIRKRIQLRPEDALFFF 79
Score = 67.3 bits (157), Expect = 7e-12
Identities = 28/40 (70%), Positives = 32/40 (80%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
F NNVIP T TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 77 FFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical
protein ZK593.6 protein.
Length = 130
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 205
+KE F +R+ E+IR + P++VPVI+E+ R L +D+ K+LVP +TV + +
Sbjct: 17 FKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSI 76
Query: 206 IRKRIHLRPEDALF 247
+R+R+ L P+ A F
Sbjct: 77 VRRRLQLHPQQAFF 90
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 244 FLLRNN-VIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
FLL N + S +M +LY + D D F+Y+ ++ + +G
Sbjct: 90 FLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 207 SGNVFTCGLKTHFSSSEQCHSTHICNNGVSLPRT 308
SG V TC S++ QC S + CNNG P T
Sbjct: 120 SGQVVTC------STNTQCASGYTCNNGACCPNT 147
>AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna
(proliferating cell nuclearantigen) homolog protein 1
protein.
Length = 229
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 2 QENINMKFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVE 118
++ +N+ F K + F K A +++R + VPV+VE
Sbjct: 167 KDPVNVNFSIKYMNQFTKATALSDRVRLSLCNDVPVVVE 205
>Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical
protein F14F8.12 protein.
Length = 329
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +3
Query: 321 FLSIHSIFRRKCLWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCIILWYFFII---NWHI 491
++ +H++ R + ++ NY + F + +V + ++ + L IIL+Y I +H+
Sbjct: 36 YIYVHNLNRHREKVEMGQNYFILFCFEVGLTVVDYFIATFILLFIILFYILHILQQTFHV 95
Query: 492 ILYLSSM-NSIK 524
IL+L ++ NS+K
Sbjct: 96 ILFLLAVFNSLK 107
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 207 SGNVFTCGLKTHFSSSEQCHSTHICNNGVSLPRT 308
SG V TC F++S QC S +IC+NG P T
Sbjct: 87 SGQVVTC-----FTNS-QCASGYICSNGACCPNT 114
>Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical
protein F46B6.7 protein.
Length = 614
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 301 QEHHDEDFFLYIAFSDENVYGN*FQIIHFQIVLHYLTI 414
+E D F L F N GN +IIH ++H+L +
Sbjct: 296 REREDTSFQLQCIFCRYNARGNRSKIIHHLYMIHHLNL 333
>AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical
protein C30E1.6 protein.
Length = 247
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 393 SFTLSDHMVKFNLSLRLKLCIILWYFFII 479
SFT+ + + F++ L KL +++++FF I
Sbjct: 116 SFTIPNFSISFSIFLWAKLQVLIYFFFYI 144
>Z81533-6|CAB04339.1| 347|Caenorhabditis elegans Hypothetical
protein F36G9.9 protein.
Length = 347
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Frame = +2
Query: 248 FFGTMS---FHPHLQQWGLS-TKNTMMKIS 325
FFGT+S F+PH +QW +S +N M S
Sbjct: 292 FFGTLSMLYFNPHYRQWVISAVRNRPMNTS 321
>AF022975-3|AAB70674.1| 548|Caenorhabditis elegans Hypothetical
protein K09C6.8 protein.
Length = 548
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 493 IICQ-LIIKKYHKIIHNFNLRLKLNF 419
++C+ L + +YH+ I++F+ R +NF
Sbjct: 86 VVCRYLALNQYHQTIYHFHFRAAINF 111
>AF022975-1|AAB70675.3| 587|Caenorhabditis elegans Hypothetical
protein K09C6.7 protein.
Length = 587
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/26 (34%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 493 IICQ-LIIKKYHKIIHNFNLRLKLNF 419
++C+ L + +YH+ I++F+ R +NF
Sbjct: 271 VVCRYLALNQYHQTIYHFHFRAAINF 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,000
Number of Sequences: 27780
Number of extensions: 268498
Number of successful extensions: 817
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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