Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0991.Seq
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.9  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   5.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   5.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 244 FLLRNNVIPPTSATM 288
           FLL   +IPPTS T+
Sbjct: 282 FLLLAEIIPPTSLTV 296


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 441 LKLCIILWYFFIINWHIIL 497
           +K  +ILW FF+ N  +IL
Sbjct: 82  MKNDVILWDFFVKNARMIL 100


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 441 LKLCIILWYFFIINWHIIL 497
           +K  +ILW FF+ N  +IL
Sbjct: 56  MKNDVILWDFFVKNARMIL 74


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 235 RRTFLLRNNVIPPTSATMGSLYQEHHDE 318
           RR   L  N++PP  A        HHD+
Sbjct: 751 RRNGALIYNILPPHVAAYFLSRARHHDD 778


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 363 SIDIFVGKCYV 331
           SID+++G C+V
Sbjct: 282 SIDVYLGTCFV 292


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 363 SIDIFVGKCYV 331
           SID+++G C+V
Sbjct: 282 SIDVYLGTCFV 292


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 363 SIDIFVGKCYV 331
           SID+++G C+V
Sbjct: 221 SIDVYLGTCFV 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,342
Number of Sequences: 438
Number of extensions: 3208
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)