Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0991.Seq
(584 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16520.2 68417.m02501 autophagy 8f (APG8f) identical to autop... 104 5e-23
At4g16520.1 68417.m02500 autophagy 8f (APG8f) identical to autop... 104 5e-23
At2g05630.1 68415.m00599 autophagy 8d (APG8d) identical to autop... 104 5e-23
At2g45170.2 68415.m05624 autophagy 8e (APG8e) identical to autop... 103 9e-23
At2g45170.1 68415.m05623 autophagy 8e (APG8e) identical to autop... 103 9e-23
At3g60640.1 68416.m06785 autophagy 8g (APG8g) identical to autop... 101 3e-22
At1g62040.1 68414.m06997 autophagy 8c (APG8c) identical to autop... 95 4e-20
At4g21980.1 68417.m03182 autophagy 8a (APG8a) identical to autop... 94 7e-20
At4g04620.2 68417.m00676 autophagy 8b (APG8b) identical to autop... 92 2e-19
At4g04620.1 68417.m00675 autophagy 8b (APG8b) identical to autop... 92 2e-19
At3g15580.1 68416.m01974 autophagy 8i (APG8i) identical to autop... 79 3e-15
At3g06420.1 68416.m00740 autophagy 8h (APG8h) identical to autop... 79 3e-15
At5g06680.1 68418.m00754 tubulin family protein similar to SP|Q9... 30 0.99
At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3... 28 4.0
At1g49050.1 68414.m05500 aspartyl protease family protein contai... 28 4.0
At1g27960.1 68414.m03425 expressed protein contains Pfam profile... 28 5.3
At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ... 27 7.0
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 27 9.2
At1g45150.1 68414.m05176 expressed protein 27 9.2
At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit... 27 9.2
>At4g16520.2 68417.m02501 autophagy 8f (APG8f) identical to
autophagy 8f [Arabidopsis thaliana] GI:19912161;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
Length = 121
Score = 104 bits (249), Expect = 5e-23
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = +2
Query: 20 KFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 199
K +K+ H EKR+A +IR KYPDR+PVIVEKA K+ + +DKKKYLVP+DLTVGQF
Sbjct: 3 KSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQFV 62
Query: 200 FLIRKRIHLRPEDALFFF 253
++IRKRI L E A+F F
Sbjct: 63 YVIRKRIKLSAEKAIFIF 80
Score = 50.4 bits (115), Expect = 9e-07
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 226 AA*RRTFLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
+A + F+ +NV+PP A M S+Y+E D+D FLY+ +S EN +G
Sbjct: 72 SAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117
>At4g16520.1 68417.m02500 autophagy 8f (APG8f) identical to
autophagy 8f [Arabidopsis thaliana] GI:19912161;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
Length = 121
Score = 104 bits (249), Expect = 5e-23
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = +2
Query: 20 KFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 199
K +K+ H EKR+A +IR KYPDR+PVIVEKA K+ + +DKKKYLVP+DLTVGQF
Sbjct: 3 KSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQFV 62
Query: 200 FLIRKRIHLRPEDALFFF 253
++IRKRI L E A+F F
Sbjct: 63 YVIRKRIKLSAEKAIFIF 80
Score = 50.4 bits (115), Expect = 9e-07
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 226 AA*RRTFLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
+A + F+ +NV+PP A M S+Y+E D+D FLY+ +S EN +G
Sbjct: 72 SAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117
>At2g05630.1 68415.m00599 autophagy 8d (APG8d) identical to
autophagy 8d [Arabidopsis thaliana] GI:19912157;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
Length = 120
Score = 104 bits (249), Expect = 5e-23
Identities = 45/75 (60%), Positives = 59/75 (78%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 208
+K H EKR+A +IR KYPDR+PVIVE+A K+ + D+D+KKYLVP+DLTVGQF +++
Sbjct: 6 FKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVV 65
Query: 209 RKRIHLRPEDALFFF 253
RKRI L PE A+F F
Sbjct: 66 RKRIKLSPEKAIFIF 80
Score = 55.2 bits (127), Expect = 3e-08
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
F+ N++PPT+A M ++Y+EH DED FLY+++S EN +G
Sbjct: 78 FIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117
>At2g45170.2 68415.m05624 autophagy 8e (APG8e) identical to
autophagy 8e [Arabidopsis thaliana] GI:19912159;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
Length = 122
Score = 103 bits (247), Expect = 9e-23
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 208
+K FEKRKA +IR KYPDR+PVIVEKA K+ + ++DKKKYLVPSDLTVGQF ++I
Sbjct: 7 FKMDDDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVI 66
Query: 209 RKRIHLRPEDALFFF 253
RKRI L E A+F F
Sbjct: 67 RKRIKLSAEKAIFIF 81
Score = 50.8 bits (116), Expect = 7e-07
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +1
Query: 226 AA*RRTFLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
+A + F+ +NV+PPT M S+Y++ DED FLYI +S EN +G
Sbjct: 73 SAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118
>At2g45170.1 68415.m05623 autophagy 8e (APG8e) identical to
autophagy 8e [Arabidopsis thaliana] GI:19912159;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
Length = 122
Score = 103 bits (247), Expect = 9e-23
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 208
+K FEKRKA +IR KYPDR+PVIVEKA K+ + ++DKKKYLVPSDLTVGQF ++I
Sbjct: 7 FKMDDDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVI 66
Query: 209 RKRIHLRPEDALFFF 253
RKRI L E A+F F
Sbjct: 67 RKRIKLSAEKAIFIF 81
Score = 50.8 bits (116), Expect = 7e-07
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +1
Query: 226 AA*RRTFLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
+A + F+ +NV+PPT M S+Y++ DED FLYI +S EN +G
Sbjct: 73 SAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118
>At3g60640.1 68416.m06785 autophagy 8g (APG8g) identical to
autophagy 8g [Arabidopsis thaliana] GI:19912163;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3; supporting cDNA
gi|19912162|dbj|AB073181.1|
Length = 121
Score = 101 bits (243), Expect = 3e-22
Identities = 46/75 (61%), Positives = 59/75 (78%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 208
+++ H FEKRKA +IR KY DRVPVIVEK+ K+ + ++DKKKYLVP+DLTVGQF ++I
Sbjct: 6 FRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQFVYVI 65
Query: 209 RKRIHLRPEDALFFF 253
RKRI L E A+F F
Sbjct: 66 RKRIQLSAEKAIFIF 80
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +1
Query: 226 AA*RRTFLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 366
+A + F+ +NV+PPT A M ++Y E+ +ED FLY+ +S EN +G+
Sbjct: 72 SAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFGS 118
>At1g62040.1 68414.m06997 autophagy 8c (APG8c) identical to
autophagy 8c [Arabidopsis thaliana] GI:19912155;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
Length = 119
Score = 94.7 bits (225), Expect = 4e-20
Identities = 41/75 (54%), Positives = 57/75 (76%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 208
+K H E+R+ +IR KYPDR+PVIVE+A ++ + ++DKKKYLVP+DLTVGQF +++
Sbjct: 6 FKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVV 65
Query: 209 RKRIHLRPEDALFFF 253
RKRI L E A+F F
Sbjct: 66 RKRIKLSAEKAIFVF 80
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +1
Query: 226 AA*RRTFLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
+A + F+ N +PPT+A M ++Y E+ DED FLY+ +S EN +G
Sbjct: 72 SAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117
>At4g21980.1 68417.m03182 autophagy 8a (APG8a) identical to
autophagy 8a [Arabidopsis thaliana] GI:19912151;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
Length = 122
Score = 93.9 bits (223), Expect = 7e-20
Identities = 43/78 (55%), Positives = 57/78 (73%)
Frame = +2
Query: 20 KFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 199
K +K + E R + +IR KYPDR+PVIVEKA ++ + D+DKKKYLVP+DLTVGQF
Sbjct: 3 KSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFV 62
Query: 200 FLIRKRIHLRPEDALFFF 253
+++RKRI L E A+F F
Sbjct: 63 YVVRKRIKLGAEKAIFVF 80
Score = 53.6 bits (123), Expect = 9e-08
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 366
F+ N +PPT+A M ++Y+EH DED FLY+ +S EN +G+
Sbjct: 78 FVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGS 118
>At4g04620.2 68417.m00676 autophagy 8b (APG8b) identical to
autophagy 8b [Arabidopsis thaliana] GI:19912153;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
Length = 122
Score = 92.3 bits (219), Expect = 2e-19
Identities = 43/78 (55%), Positives = 57/78 (73%)
Frame = +2
Query: 20 KFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 199
K +K + E R A +IR KYP+RVPVIVEKA ++ + D+DKKKYLVP+DLT+GQF
Sbjct: 3 KNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFV 62
Query: 200 FLIRKRIHLRPEDALFFF 253
+++RKRI L E A+F F
Sbjct: 63 YVVRKRIKLGAEKAIFVF 80
Score = 54.0 bits (124), Expect = 7e-08
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN*F 372
F+ N +PPT+A M ++Y+EH DED FLY+ +S EN +G F
Sbjct: 78 FVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGGSF 120
>At4g04620.1 68417.m00675 autophagy 8b (APG8b) identical to
autophagy 8b [Arabidopsis thaliana] GI:19912153;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
Length = 122
Score = 92.3 bits (219), Expect = 2e-19
Identities = 43/78 (55%), Positives = 57/78 (73%)
Frame = +2
Query: 20 KFQYKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 199
K +K + E R A +IR KYP+RVPVIVEKA ++ + D+DKKKYLVP+DLT+GQF
Sbjct: 3 KNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFV 62
Query: 200 FLIRKRIHLRPEDALFFF 253
+++RKRI L E A+F F
Sbjct: 63 YVVRKRIKLGAEKAIFVF 80
Score = 54.0 bits (124), Expect = 7e-08
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN*F 372
F+ N +PPT+A M ++Y+EH DED FLY+ +S EN +G F
Sbjct: 78 FVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGGSF 120
>At3g15580.1 68416.m01974 autophagy 8i (APG8i) identical to
autophagy 8i [Arabidopsis thaliana] GI:19912167;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3; supporting cDNA
gi|21636957|gb|AF492760.1|
Length = 115
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/75 (46%), Positives = 51/75 (68%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 208
+KE ++ ++R A +I KYP R+PVI EK K L ++KKK+LVP D++VGQF +++
Sbjct: 4 FKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYIL 63
Query: 209 RKRIHLRPEDALFFF 253
R+HL P ALF F
Sbjct: 64 SARLHLSPGKALFVF 78
Score = 44.0 bits (99), Expect = 7e-05
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
F+ NN +P T+A M S+Y+ + D+D F+Y+ +S E +G
Sbjct: 76 FVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115
>At3g06420.1 68416.m00740 autophagy 8h (APG8h) identical to
autophagy 8h [Arabidopsis thaliana] GI:19912165;
contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3; supporting cDNA
gi|19912164|dbj|AB073182.1|
Length = 119
Score = 78.6 bits (185), Expect = 3e-15
Identities = 36/75 (48%), Positives = 48/75 (64%)
Frame = +2
Query: 29 YKEXHSFEKRKAXGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 208
+K+ S ++R I KYPDR+PVI+EK A L D++K KYLVP D+TVG F ++
Sbjct: 8 FKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHML 67
Query: 209 RKRIHLRPEDALFFF 253
KR+ L P ALF F
Sbjct: 68 SKRMQLDPSKALFVF 82
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 244 FLLRNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 363
F+ +N +P T++ M SLY +ED FLY+ +S E +G
Sbjct: 80 FVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119
>At5g06680.1 68418.m00754 tubulin family protein similar to
SP|Q96CW5 Gamma-tubulin complex component 3 {Homo
sapiens}
Length = 838
Score = 30.3 bits (65), Expect = 0.99
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 357 LWKLI-PNYSLSNSFTLSDHMVKFNLSLRLKLCIILW 464
+WK + PN SNSF VK L L+ C +LW
Sbjct: 622 IWKTMKPNCITSNSFVKLQSSVKLQLLSALRRCQVLW 658
>At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3.1)
(GLR2) identical to putative glutamate receptor GLR2
[Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant
glutamate receptor family, PMID:11379626
Length = 951
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 399 TLSDHMVKFNLSLRLKLCIILWYFFIINWHIILYL 503
T S H K +L LK ++ +FF +NW ++ ++
Sbjct: 5 TFSFHFSKVSLCFLLKQLLLYGFFFSMNWVLLSFI 39
>At1g49050.1 68414.m05500 aspartyl protease family protein contains
Pfam PF00026: Eukaryotic aspartyl protease; contains
similarity to nucellin GI:2290203 from [Hordeum vulgare]
Length = 583
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 149 DKKKYLVPSDLTVGQFYFLIRKRIHLRPEDAL 244
D KK+ P L +G + +I +++ ++PED L
Sbjct: 485 DVKKFFRPITLQIGSKWLIISRKLLIQPEDYL 516
>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 539
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 140 GDL--DKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFGTMSFHPHLQQWGLSTKNTM 313
GDL D +Y VP L+ Q+ + IHL PE +F + F H+ + S + M
Sbjct: 107 GDLYADDSRYFVPFHLSNQQYP--TPEDIHLSPEFHMFQANSRHFDRHVNERNSSEIDNM 164
Query: 314 MK 319
M+
Sbjct: 165 MR 166
>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
contains Pfam profiles PF00226: DnaJ domain, PF01556:
DnaJ C terminal region, PF00684: DnaJ central domain (4
repeats)
Length = 517
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 224 LRPEDALFFFGTMSFHPHLQQWGLSTKNTMMKIS 325
+RPED+ FGTMS +P L + T + S
Sbjct: 457 IRPEDSRTKFGTMSLNPSLPLRRMKVSETSIAFS 490
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 307 VLGRETPLLQMWVE*HCSEEEKCVFRPQ 224
V G ++ L++W HC++ KC +R Q
Sbjct: 3430 VTGHQSGALKVWRMVHCTDPIKCCYRMQ 3457
>At1g45150.1 68414.m05176 expressed protein
Length = 643
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 381 SLSNSFTLSDHMVKFNLSLRLKLCIILWYFFI 476
S + S + + V NLSLR+KL + +W F I
Sbjct: 245 STNGSTDMMEEDVVSNLSLRIKLRLTVWEFII 276
>At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit,
putative similar to SP|P39007 Oligosaccharyl transferase
STT3 subunit {Saccharomyces cerevisiae}; contains Pfam
profile PF02516: Oligosaccharyl transferase STT3 subunit
Length = 735
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 462 WYFFIINWHIILYLSSMNSIKLFKQVKDCFVFTSLXWLS 578
W F+ ++HI+L+L FK++ D +F + L+
Sbjct: 381 WSSFMFDYHILLFLFPAGLYFCFKRLTDATIFIVMYGLT 419
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,809,801
Number of Sequences: 28952
Number of extensions: 241579
Number of successful extensions: 780
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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