Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0988.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   0.97 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   2.2  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   2.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   2.2  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   2.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   9.1  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 263 YNDKIXIXNXXYNSFMFYKKXXXXXVQI 346
           YN+K    N  YN  ++YK       QI
Sbjct: 100 YNNKYNYNNNNYNKKLYYKNYIINIEQI 127


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 HGNDYFQRLEYYN 268
           H N+ +++L+YYN
Sbjct: 313 HNNNNYKKLQYYN 325


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 HGNDYFQRLEYYN 268
           H N+ +++L+YYN
Sbjct: 324 HNNNNYKKLQYYN 336


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 HGNDYFQRLEYYN 268
           H N+ +++L+YYN
Sbjct: 324 HNNNNYKKLQYYN 336


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 HGNDYFQRLEYYN 268
           H N+ +++L+YYN
Sbjct: 313 HNNNNYKKLQYYN 325


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 293 NXYX*XFYHYNILIFENNHYHDYE 222
           N Y    Y+ N   + NN+Y++Y+
Sbjct: 327 NNYNNNNYNNNYNNYNNNNYNNYK 350


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 269 HYNILIFENNHYHDYE 222
           +YN   + NN+Y++Y+
Sbjct: 100 NYNNYNYNNNNYNNYK 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,376
Number of Sequences: 438
Number of extensions: 898
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)