Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0987.Seq
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    97   2e-21
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    97   2e-21
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.36 
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    28   1.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   2.5  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   2.5  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   3.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   4.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.7  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 45/90 (50%), Positives = 59/90 (65%)
 Frame = -2

Query: 524 SQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQK 345
           S   ++QNIRK++KDGLVI+KP  +HSR R+RK   A+R GRH G+GKR+GTA ARMP  
Sbjct: 33  SNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPST 92

Query: 344 ELWXXXXXXXXXXXXXXRTAKKIDRHLYHS 255
            +W              R + KID+HLYH+
Sbjct: 93  VVWMRRQRVLRRLLRKYRESGKIDKHLYHT 122



 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 20/36 (55%), Positives = 29/36 (80%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 148
           +Y++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 123 LYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 45/90 (50%), Positives = 59/90 (65%)
 Frame = -2

Query: 524 SQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQK 345
           S   ++QN+RK+IKDGLVI+KP  +HSR R+RK   A+R GRH G+GKR+GTA ARMP  
Sbjct: 33  SNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSA 92

Query: 344 ELWXXXXXXXXXXXXXXRTAKKIDRHLYHS 255
            +W              R + KID+HLYH+
Sbjct: 93  VVWMRRQRVLRRLLRKYRESGKIDKHLYHT 122



 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 20/36 (55%), Positives = 29/36 (80%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 148
           +Y++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 123 LYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 418 SVFLRTRAREWTATGFLMTRPSLIILRMFC 507
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +1

Query: 175 LLSLLPVDVLHEHTLVLEHITLRLHVDEWYRCLSIFLAVLYFRSNFLRTL-----CLCTH 339
           L+++    V H  +LVL  + L +    ++ CLS+++++ Y R    + L     C C  
Sbjct: 121 LVTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLYISMTYKREEQGKRLAYLYVCSCFS 180

Query: 340 SSFCGIRA 363
            +F G+ A
Sbjct: 181 GAFGGLIA 188


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 187 LPVDVLHEHTLVLEHITLRL--HVDEWYRCLSIFLAVLYF 300
           LP DV  ++++   ++ L L  H D+++RCL +     YF
Sbjct: 724 LPFDVPVDNSVDFPYLRLFLEKHADDFFRCLEVAFDYPYF 763


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = +1

Query: 73  FLLLGGNT-----FLAALACLLYFIAAGL 144
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 341 VPSVAYAHWQYLFSYQS 391
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = +1

Query: 142 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHVDEWYRCLSIFLAVLYFRSNFLRT 321
           LSL  K +   + +LL + + H HTLV E +TL+L V        I  A++    ++L +
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV-------VIPPAIILSFDSYLDS 375

Query: 322 L--CLCTHSSFCGIRALAVPLL 381
           L  CL + S+  G+   ++ LL
Sbjct: 376 LNDCLLSESTHTGVLCSSLKLL 397


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = -2

Query: 533  SMRSQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNT 420
            S R+ T +   ++ +IK+    +KP    ++++++KN+
Sbjct: 907  STRNFTESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 506 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 390
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,330
Number of Sequences: 5004
Number of extensions: 44582
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)