Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0987.Seq
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...   102   2e-22
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...   102   2e-22
07_03_1639 + 28305801-28305958,28306240-28306249                       33   0.16 
03_02_0050 + 5272471-5274861                                           30   1.1  
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148...    29   1.9  
04_04_1687 - 35365766-35366356,35367137-35368135                       29   3.4  
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942     29   3.4  
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416     29   3.4  
02_05_1290 - 35500515-35500897,35501560-35502031,35502174-35502212     28   5.9  
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    27   7.8  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =  102 bits (245), Expect = 2e-22
 Identities = 46/89 (51%), Positives = 60/89 (67%)
 Frame = -2

Query: 524 SQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQK 345
           S   ++QNIRK++KDG +IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K
Sbjct: 33  SMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTK 92

Query: 344 ELWXXXXXXXXXXXXXXRTAKKIDRHLYH 258
            LW              R AKKID+H+YH
Sbjct: 93  ILWMRRMRVLRRLLRKYREAKKIDKHMYH 121



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 148
           +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 123 MYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =  102 bits (245), Expect = 2e-22
 Identities = 46/89 (51%), Positives = 60/89 (67%)
 Frame = -2

Query: 524 SQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQK 345
           S   ++QNIRK++KDG +IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K
Sbjct: 33  SMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTK 92

Query: 344 ELWXXXXXXXXXXXXXXRTAKKIDRHLYH 258
            LW              R AKKID+H+YH
Sbjct: 93  ILWMRRMRVLRRLLRKYREAKKIDKHMYH 121



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 148
           +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 123 MYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>07_03_1639 + 28305801-28305958,28306240-28306249
          Length = 55

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -1

Query: 249 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 148
           MK KGN+  NKR       + +AEKAR + LSDQ
Sbjct: 1   MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 76  LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 234
           LLL     L+  +CL   +     L  +HL P LLS +P+D L H H  +L H+
Sbjct: 79  LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132


>06_01_0191 +
           1478267-1478929,1480579-1480789,1482625-1482925,
           1483217-1483612,1483993-1484070,1484166-1484373
          Length = 618

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 555 CGWIQNEINEIANTNSAEHP*DDQGWSRHQETCSSPLP 442
           C   +NE+  +   NS + P  D GW  + E C +PLP
Sbjct: 369 CKASRNELGGLGFCNSNQDP--DAGWYVNMEECITPLP 404


>04_04_1687 - 35365766-35366356,35367137-35368135
          Length = 529

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 471 HQETCSSPLPRPCPQKHR 418
           H E C +PLP P P  HR
Sbjct: 53  HAEQCPAPLPDPLPSAHR 70


>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
          Length = 379

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 536 KSMRSQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTA 366
           +++ S    Q N   + KDG  ++    + +RA  R +T+A R+  HC   G+G RR  +
Sbjct: 157 EALYSMAIIQFNGSGLPKDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLS 216

Query: 365 NAR 357
             R
Sbjct: 217 GGR 219


>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
          Length = 302

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 479 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 366
           G+ +K+    H  +    +    R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249


>02_05_1290 - 35500515-35500897,35501560-35502031,35502174-35502212
          Length = 297

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 509 QQNIRKMIKDGLVIKKPVAVHSRA 438
           Q+ +RK I +GLV+  P AVH R+
Sbjct: 274 QELLRKQITEGLVMASPHAVHFRS 297


>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 102 RGACVPPLLYCGGP 143
           +GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,708
Number of Sequences: 37544
Number of extensions: 340097
Number of successful extensions: 989
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)