Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0987.Seq
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              114   4e-26
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          29   3.5  
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   4.6  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   4.6  
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_59190| Best HMM Match : rve (HMM E-Value=6e-18)                     28   6.1  
SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17)                 28   6.1  
SB_31840| Best HMM Match : RuvA_N (HMM E-Value=5.6)                    28   6.1  
SB_28788| Best HMM Match : RVP (HMM E-Value=0.028)                     28   6.1  
SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)               28   6.1  
SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)                  28   6.1  
SB_860| Best HMM Match : RVP (HMM E-Value=0.018)                       28   6.1  
SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)                   28   6.1  
SB_46473| Best HMM Match : RVP (HMM E-Value=0.029)                     28   6.1  
SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17)                 28   6.1  
SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17)                   28   6.1  
SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)                 28   6.1  
SB_13078| Best HMM Match : RVP (HMM E-Value=0.039)                     28   6.1  
SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)                   28   6.1  
SB_8937| Best HMM Match : RVP (HMM E-Value=0.029)                      28   6.1  
SB_4291| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  114 bits (275), Expect = 4e-26
 Identities = 54/86 (62%), Positives = 62/86 (72%)
 Frame = -2

Query: 512 TQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWX 333
           ++QN+RK+IKDGL+IKKP  VHSRARVRK  EAR KGRH G GKR+GTANARMPQK +W 
Sbjct: 65  SRQNVRKLIKDGLIIKKPEIVHSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWI 124

Query: 332 XXXXXXXXXXXXXRTAKKIDRHLYHS 255
                        R AKKID H+YHS
Sbjct: 125 RRMRVLRRLLRKYREAKKIDNHMYHS 150



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 37/73 (50%), Positives = 47/73 (64%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXX 76
           +YMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ                        
Sbjct: 151 LYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRK 210

Query: 75  ELLQTFAREDEAA 37
           ++L  +A+E+EAA
Sbjct: 211 DMLSAYAKEEEAA 223


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 443 RARVRKNTEARRKGRHCGFGKRRGTANAR 357
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 314 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 436
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 149 WSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*MSGIDACQSSWQ 289
           W  ++  +  S    W+Y +S R +        + M G     SSWQ
Sbjct: 683 WGFNLLAMFSSCINPWLYCLSNRTYRREFMALLLCMPGFQTGGSSWQ 729


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 314 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 436
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +1

Query: 73  FLLLGGNTFLAALAC 117
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 89  PPRRRNCCRPSLEKTKPRLPLRSK 18
           PP  +N  +P ++KTKP  PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222


>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 266 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 367
           D  + S Q C     FLEP  VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225


>SB_59190| Best HMM Match : rve (HMM E-Value=6e-18)
          Length = 660

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 224 PTQQKLREMEEDGIIVKE 241


>SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 938

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 124 PTQQKLREMEEDGIIVKE 141


>SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17)
          Length = 635

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 172 PTQQKLREMEEDGIIVKE 189


>SB_31840| Best HMM Match : RuvA_N (HMM E-Value=5.6)
          Length = 895

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 208 EHTLVLEHITLRLHVDEWYRCLSIFLAVLYFRSNFLRTLCLCT 336
           +H L   H T R H    YR L  F +     +N+   L +CT
Sbjct: 214 QHALSFRHYTYRNHEKFQYRDLRNFRSYFRHGNNYAGVLVICT 256


>SB_28788| Best HMM Match : RVP (HMM E-Value=0.028)
          Length = 278

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 224 PTQQKLREMEEDGIIVKE 241


>SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
          Length = 557

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 445 PTQQKLREMEEDGIIVKE 462


>SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 224 PTQQKLREMEEDGIIVKE 241


>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
          Length = 1432

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 340 PTQQKLREMEEDGIIVKE 357


>SB_860| Best HMM Match : RVP (HMM E-Value=0.018)
          Length = 260

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 206 PTQQKLREMEEDGIIVKE 223


>SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)
          Length = 800

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 172 PTQQKLREMEEDGIIVKE 189


>SB_46473| Best HMM Match : RVP (HMM E-Value=0.029)
          Length = 304

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 224 PTQQKLREMEEDGIIVKE 241


>SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17)
          Length = 429

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 78  PTQQKLREMEEDGIIVKE 95


>SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17)
          Length = 890

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 172 PTQQKLREMEEDGIIVKE 189


>SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
          Length = 649

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 396 PTQQKLREMEEDGIIVKE 413


>SB_13078| Best HMM Match : RVP (HMM E-Value=0.039)
          Length = 251

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 224 PTQQKLREMEEDGIIVKE 241


>SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)
          Length = 1003

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 208 PTQQKLREMEEDGIIVKE 225


>SB_8937| Best HMM Match : RVP (HMM E-Value=0.029)
          Length = 303

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 224 PTQQKLREMEEDGIIVKE 241


>SB_4291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 515 PTQQNIRKMIKDGLVIKK 462
           PTQQ +R+M +DG+++K+
Sbjct: 120 PTQQKLREMEEDGIIVKE 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,245,038
Number of Sequences: 59808
Number of extensions: 358421
Number of successful extensions: 1005
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)