Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0987.Seq
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   109   1e-24
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    30   1.3  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    27   9.3  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  109 bits (262), Expect = 1e-24
 Identities = 49/85 (57%), Positives = 62/85 (72%)
 Frame = -2

Query: 512 TQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWX 333
           ++Q+IR+++ DGL+I+KPV VHSR R R+  EARRKGRH G+GKRRGTANARMP+K LW 
Sbjct: 37  SRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWI 96

Query: 332 XXXXXXXXXXXXXRTAKKIDRHLYH 258
                        R AKK+D+HLYH
Sbjct: 97  RRMRVLRNLLRRYRDAKKLDKHLYH 121



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 148
           +Y++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 123 LYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 122 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 18
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 524  SQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 390
            S T + +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 75  PPSWRQYVPRGACVPPL 125
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +2

Query: 164 FVLAFSAFFLWMYSMSTRLFLNTLPFAFM*MSGIDACQSSWQFCTSGAIFLEPFVFVPIV 343
           F+ A+   FL +  +S R++    PF     S     +  W +C   A+FL    F+P  
Sbjct: 92  FIYAYP-MFLTILMISERIYCIIYPFGRAFTS-----KKLWLYCLGLAMFLLILFFIPFF 145

Query: 344 PSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 442
              A  +  Y F Y S  D D   + L F  + R
Sbjct: 146 GGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 101 RNVLPPRRRNCCRPSLEKTKPRLP 30
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
            C48B4.4c protein.
          Length = 1704

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 170  LAFSAFFLWMYSMSTRLFLNTLPFAFM*MSGIDACQSSWQFCTSGAIFLEPFVFVPI 340
            LA    F ++Y  S+  F+  + F F   S  +     WQ   SGA  L  F+   I
Sbjct: 1200 LAIVILFWFLYFFSSVPFIYAVSFLFQSPSKANVLLIIWQVVISGAALLAVFLIFMI 1256


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
            C48B4.4b protein.
          Length = 1691

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 170  LAFSAFFLWMYSMSTRLFLNTLPFAFM*MSGIDACQSSWQFCTSGAIFLEPFVFVPI 340
            LA    F ++Y  S+  F+  + F F   S  +     WQ   SGA  L  F+   I
Sbjct: 1187 LAIVILFWFLYFFSSVPFIYAVSFLFQSPSKANVLLIIWQVVISGAALLAVFLIFMI 1243


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
            C48B4.4a protein.
          Length = 1689

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 170  LAFSAFFLWMYSMSTRLFLNTLPFAFM*MSGIDACQSSWQFCTSGAIFLEPFVFVPI 340
            LA    F ++Y  S+  F+  + F F   S  +     WQ   SGA  L  F+   I
Sbjct: 1185 LAIVILFWFLYFFSSVPFIYAVSFLFQSPSKANVLLIIWQVVISGAALLAVFLIFMI 1241


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
            cassette transporter protein.
          Length = 1704

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 170  LAFSAFFLWMYSMSTRLFLNTLPFAFM*MSGIDACQSSWQFCTSGAIFLEPFVFVPI 340
            LA    F ++Y  S+  F+  + F F   S  +     WQ   SGA  L  F+   I
Sbjct: 1200 LAIVILFWFLYFFSSVPFIYAVSFLFQSPSKANVLLIIWQVVISGAALLAVFLIFMI 1256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,562,662
Number of Sequences: 27780
Number of extensions: 265830
Number of successful extensions: 762
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)