Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0987.Seq
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.30 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.30 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   4.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 92  LPPRRRNCCRPSLEKTKPRLPLRSK 18
           + PR++NCCR  L K     P RSK
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSK 413


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 92  LPPRRRNCCRPSLEKTKPRLPLRSK 18
           + PR++NCCR  L K     P RSK
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSK 413


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 357 TRIGSTSSLTKATVTT--LSTCLCVFADTGAG 446
           ++ GST + T ATVTT   +T L   + TG G
Sbjct: 206 SKAGSTDASTPATVTTTGATTTLPAASATGTG 237


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 265 RCLSIFLAVLYFRSNFLRTLCLC 333
           RC+ +FL+V+   S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 512 LVFAISLISFWIQPHLL 562
           L+  +S I+FWI+P  +
Sbjct: 226 LIVVMSWIAFWIKPEAI 242


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 512 LVFAISLISFWIQP 553
           L+  +S +SFWI+P
Sbjct: 257 LIVIMSWVSFWIKP 270


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 238 LRLHVDEWYRCLSIFLA 288
           LR H+D++ +C S+ LA
Sbjct: 35  LRSHLDKFLQCASLKLA 51


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 100 LAALACLLYFIAAGLSLVAKHLRPGL 177
           L  L+C+L+F+   + +   ++R GL
Sbjct: 205 LYQLSCILFFLIPMVFIAVLYIRIGL 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,173
Number of Sequences: 438
Number of extensions: 3691
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)