Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0987.Seq
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   101   3e-22
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   100   1e-21
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...    97   5e-21
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    36   0.025
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    29   2.8  
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    29   2.8  
At5g22130.1 68418.m02576 mannosyltransferase family protein simi...    28   3.7  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   3.7  
At4g09775.1 68417.m01606 hypothetical protein                          27   6.5  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    27   6.5  
At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquiti...    27   6.5  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    27   6.5  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  101 bits (243), Expect = 3e-22
 Identities = 45/89 (50%), Positives = 59/89 (66%)
 Frame = -2

Query: 524 SQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQK 345
           S   ++QNIRK++KDG +I+KP  +HSR+R R   EA+RKGRH G+GKR+GT  AR+P K
Sbjct: 33  SMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTK 92

Query: 344 ELWXXXXXXXXXXXXXXRTAKKIDRHLYH 258
            LW              R +KKIDRH+YH
Sbjct: 93  ILWMRRMRVLRRFLSKYRESKKIDRHMYH 121



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 148
           +YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 44/89 (49%), Positives = 58/89 (65%)
 Frame = -2

Query: 524 SQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQK 345
           S   ++QNIRK++KDG +I+KP  +HSR+R R+   A+RKGRH G+GKR+GT  AR+P K
Sbjct: 33  SMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTK 92

Query: 344 ELWXXXXXXXXXXXXXXRTAKKIDRHLYH 258
            LW              R  KKIDRH+YH
Sbjct: 93  VLWMRRMRVLRRLLKKYRETKKIDRHMYH 121



 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 29/36 (80%), Positives = 31/36 (86%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 148
           +YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score = 97.5 bits (232), Expect = 5e-21
 Identities = 43/89 (48%), Positives = 57/89 (64%)
 Frame = -2

Query: 524 SQTPTQQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQK 345
           S   ++QNIRK++KDG +I+KP  +HSR+R RK   A+ KGRH G+GKR+GT  AR+P K
Sbjct: 33  SMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTK 92

Query: 344 ELWXXXXXXXXXXXXXXRTAKKIDRHLYH 258
            LW              R  KKID+H+YH
Sbjct: 93  VLWMRRMRVLRRLLKKYRETKKIDKHMYH 121



 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 148
           +YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 123 MYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 255 IYMKAKGNVFKNKRVLMEYIHRKKAEK 175
           ++MK KG V+KNK VLME +H+   E+
Sbjct: 40  MFMKVKGKVYKNKCVLMESMHKSSRER 66


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +2

Query: 149  WSLSIFVLAFSAFFLWMYSMSTRL 220
            W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 130  IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRLHVDE 258
            IA  L    KHL+P L+SL+P  V H EH L    +  RL   E
Sbjct: 974  IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERLQKPE 1017


>At5g22130.1 68418.m02576 mannosyltransferase family protein similar
           to mannosyltransferase from Rattus norvegicus
           [GI:11414877], Homo sapiens [GI:11414879]; contains Pfam
           profile PF05007: Mannosyltransferase (PIG-M)
          Length = 450

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +1

Query: 46  VFSSEGLQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVL 225
           +FS E +  F L+ G  FLA  A   YF   G   + + L   L  L   D  H  ++  
Sbjct: 238 LFSRERIM-FALISGGVFLACNAVSFYFY--GQEFLHEAL---LYHLTRTDPRHNFSIYF 291

Query: 226 EHITLRLHVDEWYRCLSIFLAVL-YFRSNFLRTLCLCTHSSFC 351
            HI   LH +  +  +   ++ L  F   F    C      FC
Sbjct: 292 YHI--YLHYERQFSAVEKLISFLPQFTVQFALVFCFSQDLVFC 332


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 482 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 363
           D +  KK + + +  ++RKN + RR+G   G G RR  A+
Sbjct: 77  DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116


>At4g09775.1 68417.m01606 hypothetical protein
          Length = 141

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 549 WIQNEINEIANTNSAEHP*DDQGWSRHQETCSSP 448
           W++  IN+ AN++S E P +D+   R +E    P
Sbjct: 34  WVETTINDTANSHSTEQP-NDRPSGRSKEWSPPP 66


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 446 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 339
           SR+R R  + +R +GR     + R  + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244


>At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquitin
           ligase SCF complex F-box subunit; identical to F-box
           containing protein ORE9 GI:15420162 from [Arabidopsis
           thaliana]
          Length = 693

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 555 CGWIQNEINEI---ANTNSAEHP*DDQGWSRHQETC 457
           C W  +E  E+     T+ A+H  +D G+ R Q+ C
Sbjct: 436 CVWSGSEDEEVEGRVETSEADHEEEDDGYERSQKRC 471


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 482 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 369
           D L++      H R+ VR+    R +GR  G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,922,465
Number of Sequences: 28952
Number of extensions: 252092
Number of successful extensions: 750
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)