Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0986.Seq
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 32 0.067
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 0.83
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.9
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 26 3.4
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 4.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 5.9
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 5.9
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 25 5.9
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 7.7
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 25 7.7
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.7
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 31.9 bits (69), Expect = 0.067
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 350 SNLSALWILNA-NGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVSQVKFVHT 502
+N S + I+N NG ++PT A D+ T+R E+ S + L + +K+ T
Sbjct: 2048 ANFSPVPIINGGNGSKEHPTQAFLDLYTIREELGSVNGLTITFIGDLKYGRT 2099
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 28.3 bits (60), Expect = 0.83
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 523 GHVARITGVHKFHLADRIKDQLAEAGHLHTQGVDIKMRTGRV 398
G++ +TGVH ++++D A+ G + +++ RTG V
Sbjct: 9 GYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYV 50
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 279 SPTKVDSRRRPLMLPSPAVRQKYRPHSWN 193
S TKV + +++P P+ + + RP WN
Sbjct: 320 SSTKVLDKASDILIPFPSSKNRPRPGDWN 348
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 191 LFQLCGRYFWRTAGDGSINGLLLESTFVGLFFFGWQRLNKYQHLL 325
LF LCG Y+W G + L S + F G + QH L
Sbjct: 393 LFGLCGAYYWSPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFL 437
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 7 LYPLPWG*FFCWLLWKPFTWSPAKQSTA 90
L+ PW F +L + W PAK+ TA
Sbjct: 300 LFSPPWNLAFASMLSQLLKWDPAKRPTA 327
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 245 NGLLLESTFVGLFFFGWQRLNK 310
N LL S G+F F W +NK
Sbjct: 1241 NALLTSSRVFGIFMFTWSLVNK 1262
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 372 IHNAERFEPNATSHVTSRCW-YLFSRCQPKKNSPT 271
+ N ERF + H T R W ++++C P ++PT
Sbjct: 187 LENPERFTGYSGPHST-RIWEMIYNQCLPDSSAPT 220
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 523 GHVARITGVHKFHLADRIKDQLAEAGHLHT 434
GH I G ++FHL + ++ G HT
Sbjct: 25 GHQCHIVGRNEFHLKETLQSLSVAKGQQHT 54
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 344 FGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPV 478
F + L LW+ G Q G + + L ++TS VF+P+
Sbjct: 1256 FHAELYKLWVCLLEGLRQRNLGNYMEALRLFEKVTSMGASVFSPI 1300
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 374 ISTTQRDLNRTPPATSPAGAGIYSA 300
++T++RD T TSP G IY+A
Sbjct: 335 LTTSKRDFGVTNVCTSPDGERIYAA 359
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 304 QPLPAEEEQPDKGGFEE 254
+P P EEEQP GG EE
Sbjct: 457 KPSPNEEEQPAIGGKEE 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,134
Number of Sequences: 5004
Number of extensions: 55791
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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