Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0986.Seq
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0160 + 14585559-14586230                                         29   2.0  
07_03_0401 + 17724103-17724463,17724554-17724683,17725068-177250...    29   2.0  
10_02_0144 + 5815403-5815520,5815551-5816314                           29   2.6  
05_04_0252 - 19386942-19387048,19388332-19388947                       29   2.6  
01_05_0045 + 17535929-17536249,17536255-17536520,17537169-175377...    29   2.6  
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758     28   4.5  
05_03_0144 - 8874588-8874644,8874802-8874841,8875970-8876025           28   6.0  
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97...    27   7.9  

>12_02_0160 + 14585559-14586230
          Length = 223

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 344 TPPATSPAGAGIYSAVASRRRTARQRWIRG 255
           T  A SP G G+ +A  +RRR  RQRW  G
Sbjct: 48  TGVAASPRGGGV-AAETARRRRRRQRWRGG 76


>07_03_0401 +
           17724103-17724463,17724554-17724683,17725068-17725083,
           17725130-17725203,17725693-17725761,17726224-17726257
          Length = 227

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -2

Query: 413 AHRSGIASXRWHSISTTQRDLNRTPPATSPAGA 315
           A     AS R HS S  +RD   T PATS A A
Sbjct: 15  ARHGPAASDRHHSASAARRDAAATRPATSVAAA 47


>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 496 HKFHLADRIKDQLAEAGHLHTQGVDIKMRTGRVLHP 389
           H F     +K+  A+ GH+ ++ +++  R GRVL P
Sbjct: 57  HIFPACGPVKECGAQTGHVFSRSIEVVRRGGRVLAP 92


>05_04_0252 - 19386942-19387048,19388332-19388947
          Length = 240

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = -3

Query: 523 GHVARITGVHKFH--LADRIKDQLAEAGHLHTQG----VDIKMRTGRVLHPXVGIQYPQR 362
           GH+A+I G  ++    A   + +L     LH Q      D+     RV        Y + 
Sbjct: 57  GHLAQIGGDAEYEAVFAALHRRRLNWFPVLHMQKFYSVADVAAELRRVADARASAAYSEE 116

Query: 361 REI*TERHQPRHQQVLVFIQPLPAEEEQPD 272
               T  H+P  + V +  +P P +E++PD
Sbjct: 117 EAASTVIHEPMDELVAMAAEPEPEQEQEPD 146


>01_05_0045 +
           17535929-17536249,17536255-17536520,17537169-17537707,
           17537779-17538386
          Length = 577

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = +3

Query: 21  LGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSN 200
           L L FL  + E  Y ++ +  +++ +  W    G++  LG      ++ Q G +    + 
Sbjct: 305 LTLQFLCTLKEIEYGISFRFFHKEYSLTWK---GLSTLLGFHDSCKIDLQKGISGFEKNR 361

Query: 201 YVGDIFGAPL 230
           ++ DI+GAP+
Sbjct: 362 FLEDIYGAPI 371


>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
          Length = 223

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -2

Query: 452 SWSSPYAGCRYQNAHRSGIASXRWHSISTTQRDLNRTPPATSPAGAGIYSAVASRRRTAR 273
           S +SP    R +++ RS +AS R  + S     +    PA SPA A + S    R   A 
Sbjct: 69  SSASPNPAPRSRSSRRSPLASPRTGTASPLSAAVAPGGPAPSPASAAVSSVGDLRSSAAS 128

Query: 272 Q 270
           Q
Sbjct: 129 Q 129


>05_03_0144 - 8874588-8874644,8874802-8874841,8875970-8876025
          Length = 50

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 324 SRCW-YLFSRCQPKKNSPTKVDSRRRPLMLPS 232
           +RCW Y+F   QP    PTK +   R L  P+
Sbjct: 18  ARCWWYIFCTSQPPTLPPTKTNFHWRALRRPA 49


>09_01_0066 -
           978018-978500,978588-979034,979113-979412,979521-979855,
           980325-980703
          Length = 647

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 344 TPPATSPAGAGIYSAVASRRRTARQRWIRGEGH--*CFHR 231
           T PA+ P GA +Y A   RR+  R R  R   H   C HR
Sbjct: 61  TKPASPPTGAALYRARRCRRKLLRCR-ARHRRHRDRCLHR 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,172,731
Number of Sequences: 37544
Number of extensions: 429727
Number of successful extensions: 1312
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)