Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0986.Seq
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)                  33   0.12 
SB_25932| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_49108| Best HMM Match : Bcl-2 (HMM E-Value=1.1e-28)                 27   8.1  
SB_23190| Best HMM Match : MHC_I_C (HMM E-Value=1.5)                   27   8.1  

>SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)
          Length = 502

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -2

Query: 452 SWSSPYAGCRYQNAHRSGIASXRWHSISTTQRDLNRTPPATSPAGAGIYSAVASRRRTAR 273
           S+S PY+   YQ A +   +  R H  S      +  PP T+P  +G       +   A 
Sbjct: 399 SYSHPYS---YQPASQQQTSVQRDHGASYANPSTSGPPPYTAPPTSGTQQPAPRKSNVAN 455

Query: 272 QRWIRGEG 249
           Q +I+G G
Sbjct: 456 QEFIKGLG 463


>SB_25932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 188 ILFQLCGRYFWRTAGDGSINGLLLESTFVGLF 283
           +LFQL  R  W+TA +  + G L  + F+G F
Sbjct: 11  LLFQLKSRSTWQTATETVLFGFLTLTAFIGNF 42


>SB_49108| Best HMM Match : Bcl-2 (HMM E-Value=1.1e-28)
          Length = 252

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = +2

Query: 245 NGLLLESTFVGLFFFGWQRLNKYQH------LLVTWLVAFGSNLSALWILNANGW 391
           +G++     V LF+FG++   K  +      +++ W+V F       WI    GW
Sbjct: 173 DGVINWGRIVTLFYFGYKLALKVLNQIPLIKMIIEWVVKFVKEKLVKWIFQQGGW 227


>SB_23190| Best HMM Match : MHC_I_C (HMM E-Value=1.5)
          Length = 182

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 345 NATSHVTSRCWYLFSRCQPKKNSPTKVDSRRRPL 244
           N+  HV + C  + + C+P  NS   V++ R P+
Sbjct: 33  NSCEHVNNSCEPVNNSCEPVNNSCEHVNNSREPV 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,137,593
Number of Sequences: 59808
Number of extensions: 465104
Number of successful extensions: 1154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)