Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0986.Seq
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 29 1.8
U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical pr... 29 1.8
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 7.1
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 7.1
AF024500-3|AAB70363.1| 314|Caenorhabditis elegans Hypothetical ... 27 7.1
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68493-10|CAA92797.2| 329|Caenorhabditis elegans Hypothetical p... 27 9.4
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL032631-9|CAA21575.2| 893|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -2
Query: 464 PAR*SWSSPYAGCRYQNAHRSGIASXRW---HSISTTQRDLNRTPPATSPAGAGIYSAVA 294
P S ++PY RY +A R G +S +ST+ + TPP PA + + ++ +
Sbjct: 273 PTSTSTTTPYRSNRYSSATRGGNSSSAAPLDDIMSTSYSSVAATPP---PAYSQLSTSTS 329
Query: 293 SRRRTARQRWIRGE 252
+ RT R+R R E
Sbjct: 330 TLLRTRRERLEREE 343
>U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical
protein F20B6.5 protein.
Length = 317
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 386 RWHSISTTQRDLNRTPPATSPAGAGIYSAVASRR 285
R H I + RD NR+PP P GA + + S+R
Sbjct: 3 RHHPIRVSPRD-NRSPPGDEPTGANLSESELSQR 35
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 27.5 bits (58), Expect = 7.1
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = -1
Query: 459 SLKLVISIRRVSISKCAPVGYC-IXPLAF--NIHNAERFEPNATSHVTSRCWYLFSRC-Q 292
SL V++ + ++ CAPVG C L F + N + P A VT C C
Sbjct: 545 SLNSVVNGKNATVYYCAPVGMCRYFGLGFGGSYGNCGQI-PGADPQVTGCCCSETDNCLA 603
Query: 291 PKKNSPTKVDSRRRP 247
P + T + +RR P
Sbjct: 604 PAGVNVTAIPARRDP 618
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.5 bits (58), Expect = 7.1
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = -1
Query: 459 SLKLVISIRRVSISKCAPVGYC-IXPLAF--NIHNAERFEPNATSHVTSRCWYLFSRC-Q 292
SL V++ + ++ CAPVG C L F + N + P A VT C C
Sbjct: 545 SLNSVVNGKNATVYYCAPVGMCRYFGLGFGGSYGNCGQI-PGADPQVTGCCCSETDNCLA 603
Query: 291 PKKNSPTKVDSRRRP 247
P + T + +RR P
Sbjct: 604 PAGVNVTAIPARRDP 618
>AF024500-3|AAB70363.1| 314|Caenorhabditis elegans Hypothetical
protein K06H6.3 protein.
Length = 314
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 215 FWRTAGDGSINGLLLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWI 373
FW G S+ G+ S F G F GW + WLV G+++ L I
Sbjct: 193 FW--LGLASVLGMCWTSAFAGNIFHGW--------TWIVWLVTIGNSIGGLCI 235
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical protein
R10E8.6 protein.
Length = 1696
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 47 YGNHLRGHRQNNLPRYDALLG*ALRYQFCSWRG 145
YG+ GH+ +LP D A+RYQ C G
Sbjct: 1302 YGSEEFGHKNWHLPMDDREYRLAIRYQHCGAEG 1334
>Z68493-10|CAA92797.2| 329|Caenorhabditis elegans Hypothetical
protein C33A12.14 protein.
Length = 329
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 132 ALGVATGLTMEFQFGTNWSFYSNYVGDIFG 221
A+GV L +QFG+ W + YVG FG
Sbjct: 173 AIGVCKQLEFPYQFGSIWVY---YVGPAFG 199
>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
protein W02C12.1 protein.
Length = 1372
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 296 QRLN--KYQHLLVTWLVAFGSNLSALW-ILNANGWMQYPTGAHFDIDT 430
Q LN K+ HLL+TW G+ S +W L Y TG D+ T
Sbjct: 495 QHLNNGKWNHLLITWQSKTGA-YSVIWNSLRTYSNNGYATGKQLDVMT 541
>AL032631-9|CAA21575.2| 893|Caenorhabditis elegans Hypothetical
protein Y106G6H.7 protein.
Length = 893
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 565 SKYQALIXHNKHGPGHVARITGVHKFHLADRIKDQLAEA 449
+KY+ HN+ P VA +H+FH D +KD L+ A
Sbjct: 730 AKYRNTSSHNEVDPEVVALGKDLHQFH--DNLKDVLSPA 766
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,540,604
Number of Sequences: 27780
Number of extensions: 331532
Number of successful extensions: 888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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