Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0986.Seq
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.93 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 47  YGNHLRGHRQNNLPRY 94
           YG HL GH Q   P Y
Sbjct: 210 YGRHLPGHAQMGRPSY 225


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 239 SINGLLLESTFVGLFFFGW 295
           SING L+    + LF  GW
Sbjct: 164 SINGALIRIIAIWLFSLGW 182


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 239 SINGLLLESTFVGLFFFGW 295
           SING L+    + LF  GW
Sbjct: 130 SINGALIRIIAIWLFSLGW 148


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 239 SINGLLLESTFVGLFFFGW 295
           SING L+    + LF  GW
Sbjct: 40  SINGALIRIIAIWLFSLGW 58


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 385 VGIQYPQRREI*TERHQPRHQQVLVFIQPLPAEEEQPDK-GGFEEKAINASIASGAPKIS 209
           +  Q PQ+++   ++ Q + QQ     Q  P EEE     G   +  ++ ++ S    +S
Sbjct: 435 INAQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASWGSASDVTLDEAVKSPLGSVS 494

Query: 208 PT 203
            T
Sbjct: 495 ST 496


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 173 WY*LVILFQLCGRYFWRTAGD--GSINGL 253
           WY   +++Q+  R F  + GD  G +NG+
Sbjct: 26  WYKNALVYQIYPRSFQDSDGDGIGDLNGI 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,937
Number of Sequences: 438
Number of extensions: 4209
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)