Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0986.Seq
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41705.1 68415.m05153 camphor resistance CrcB family protein ...    30   1.2  
At1g46480.1 68414.m05213 homeobox-leucine zipper transcription f...    30   1.2  
At1g15210.1 68414.m01818 ABC transporter family protein Similar ...    30   1.2  
At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative si...    29   2.9  
At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative si...    29   2.9  
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d...    27   6.6  
At2g42340.1 68415.m05240 expressed protein                             27   6.6  
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR...    27   8.7  

>At2g41705.1 68415.m05153 camphor resistance CrcB family protein
           contains Pfam profile PF02537: CrcB-like protein
          Length = 461

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +2

Query: 188 ILFQLCGRYFWRTAGDGSINGLLLESTFVGLFFFGW-QRLNKYQHLLVTWLVAFGSNLSA 364
           +L +L G    R   DGSI  L L S  VG F  GW   + K     V+  VA G +   
Sbjct: 160 LLQKLFGPTGARVTSDGSILYLDLPSNMVGSFLMGWFGVVFKADIARVSEFVAIGLSTGY 219

Query: 365 LWILNA-NGWMQ 397
           L  L   +GW Q
Sbjct: 220 LGSLTTFSGWNQ 231


>At1g46480.1 68414.m05213 homeobox-leucine zipper transcription
           factor family protein similar to wuschel protein
           (GI:22087128) [Arabidopsis thaliana]
          Length = 251

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 393 IXPLAFNIHNAERFEPNATSHVTSRCWYLFSRCQPKKNSPTKVDSRRRP 247
           + PLA  +  +    P+++S VTS  + L +  +P +  PTK + +R P
Sbjct: 30  LRPLAPKLSGSPPSPPSSSSGVTSATFDLKNFIRPDQTGPTKFEHKRDP 78


>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
            gb|Z70524 GI:1514643 PDR5-like ABC transporter from
            Spirodela polyrrhiza and is a member of the PF|00005 ABC
            transporter family. ESTs gb|N97039 and gb|T43169 come
            from this gene
          Length = 1442

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 78   TIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAF 254
            TIY  +T  +G +      LG A GLT++      + F S+Y+G + G  +      AF
Sbjct: 1370 TIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAF 1428


>At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative
           similar to aminoacyl-t-RNA synthetase GI:2654226 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF02092
           glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
           synthetase alpha subunit
          Length = 1063

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 163 SMVRPVATPRAKLIPKSLPQKRVISR 86
           S +RP A+PR  L+P+SL Q   +SR
Sbjct: 13  SFLRPHASPRFFLLPRSLSQSPFLSR 38


>At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative
           similar to aminoacyl-t-RNA synthetase GI:2654226 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF02092
           glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
           synthetase alpha subunit
          Length = 1064

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 163 SMVRPVATPRAKLIPKSLPQKRVISR 86
           S +RP A+PR  L+P+SL Q   +SR
Sbjct: 13  SFLRPHASPRFFLLPRSLSQSPFLSR 38


>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
           domain-containing protein contains Pfam profiles:
           PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
           family associated with various cellular activities (AAA)
          Length = 956

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 297 CQPKKNSPTKVDSRRRPLMLPSP 229
           C P K SP K ++R +PL   SP
Sbjct: 301 CAPPKTSPQKEETRGKPLAKSSP 323


>At2g42340.1 68415.m05240 expressed protein
          Length = 349

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 416 NAHRSGIASXRWHSISTTQRDLNRTPPATSPAGAGIYSAVASRRRTARQ 270
           N   S IAS  W S+   + +  + PP   P  A   S+ ++R++  +Q
Sbjct: 53  NLTESQIASI-WKSLIKAEEEAQQVPPPPPPPSAADVSSKSTRKKMKKQ 100


>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1170

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 534 NMAPVT*PALRVCTNFTWLTGLKTSSLKLVI 442
           NM  +    +R CT+ T L  +K SSLK++I
Sbjct: 746 NMKSLVFLNMRRCTSLTCLQSIKVSSLKILI 776


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,905,593
Number of Sequences: 28952
Number of extensions: 310757
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)