Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0985.Seq
(499 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 111 8e-24
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 106 2e-22
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 65 7e-10
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 64 1e-09
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 64 2e-09
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 63 3e-09
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 62 7e-09
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 57 2e-07
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 57 3e-07
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 54 2e-06
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 52 7e-06
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 51 1e-05
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 50 2e-05
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 48 9e-05
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 48 2e-04
UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole geno... 44 0.001
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 44 0.002
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 42 0.010
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 40 0.023
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 39 0.054
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 38 0.13
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 38 0.17
UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1; ... 34 1.5
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 33 3.6
UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1; Oltmannsiel... 33 3.6
UniRef50_Q7RQE1 Cluster: Protein factor associated with neutral-... 33 3.6
UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5; Eurotio... 33 3.6
UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7; Pezizom... 33 3.6
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 33 4.7
UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 33 4.7
UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit... 33 4.7
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 33 4.7
UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=... 33 4.7
UniRef50_P46760 Cluster: Mitochondrial ribosomal protein S13; n=... 33 4.7
UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycopla... 32 6.2
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 111 bits (267), Expect = 8e-24
Identities = 61/96 (63%), Positives = 65/96 (67%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILRIMNTNIDGKRKV AMTAIKGVGRR SNIVLKKAD+DL KRAG
Sbjct: 3 LVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEE 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
K +WFLNR KD +DGK QL
Sbjct: 63 EVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQL 98
Score = 70.1 bits (164), Expect = 3e-11
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
NLDSKLR+DLERLKKIR+ RG+RHYWGLRVRGQH
Sbjct: 102 NLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 106 bits (255), Expect = 2e-22
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 1e-10
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 65.3 bits (152), Expect = 7e-10
Identities = 37/90 (41%), Positives = 50/90 (55%)
Frame = -3
Query: 470 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNY 291
F++I RI+NTNIDGKR A+T I+G+GRR + I+ K ID + RAG + + K
Sbjct: 11 FKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKIT 70
Query: 290 HYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ A W LNR D DGK Q+
Sbjct: 71 DLIADPEAHGIPTWLLNRINDFKDGKNYQM 100
Score = 62.9 bits (146), Expect = 4e-09
Identities = 25/33 (75%), Positives = 32/33 (96%)
Frame = -2
Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
LD+K+REDLERLKKI++ RG+RH+WGL+VRGQH
Sbjct: 105 LDTKMREDLERLKKIKSHRGLRHFWGLKVRGQH 137
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 64.5 bits (150), Expect = 1e-09
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = -2
Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
LD KLR+DLERLKKIR RG+RHYWGLRVRGQH
Sbjct: 96 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 128
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 64.1 bits (149), Expect = 2e-09
Identities = 33/89 (37%), Positives = 53/89 (59%)
Frame = -3
Query: 467 QHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNYH 288
Q+I+RI NTNIDG +++ FA+T I+G+G R + + K+ IDL KRAG M +
Sbjct: 11 QYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISD 70
Query: 287 YHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
++ +V + ++N +D +DG S L
Sbjct: 71 AILDPASVGIPESYMNHQRDIIDGTTSHL 99
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 63.3 bits (147), Expect = 3e-09
Identities = 35/92 (38%), Positives = 51/92 (55%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
+V P+ ++ +LR+ NTNI GK + A+ IKG+GRR +N+ LKKA+ID+ KRAG +
Sbjct: 4 IVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTAA 63
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGK 213
+ + W LNR D GK
Sbjct: 64 EEDALMKVLEDPLSHGIPAWMLNRNNDFESGK 95
Score = 42.3 bits (95), Expect = 0.006
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -2
Query: 171 REDLERLKKIRALRGMRHYWGLRVRGQH 88
R DLERL+K R RG+RH+ L+VRGQH
Sbjct: 109 RADLERLRKTRCERGVRHHHNLKVRGQH 136
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 62.1 bits (144), Expect = 7e-09
Identities = 29/55 (52%), Positives = 42/55 (76%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG 324
LVI + QHIL+++NTNID +++ FA+TA KG +R +++VL+KA IDL K AG
Sbjct: 3 LVISEKSQHILQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAG 57
Score = 54.8 bits (126), Expect = 1e-06
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = -2
Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
LD+KLRE+LERLKKIRA RG+RH+WGL V Q
Sbjct: 97 LDNKLREELERLKKIRAHRGLRHFWGLHVHCQ 128
Score = 42.3 bits (95), Expect = 0.006
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -1
Query: 358 KKPTLILTSVLAECTEEEVEKIITIMXNPRQYXXP 254
+K + LT + E TE++VE++ITIM NPRQY P
Sbjct: 46 RKAGIDLTKMAGELTEDKVERVITIMQNPRQYEIP 80
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 57.2 bits (132), Expect = 2e-07
Identities = 30/98 (30%), Positives = 54/98 (55%)
Frame = -3
Query: 470 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNY 291
FQ+I+RI N +++G+R + A++ +KG+G R ++ ++ D+ +DK+ G + + K
Sbjct: 28 FQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLR 87
Query: 290 HYHVES*AVXDXDWFLNRXKDXVDGKXSQLYLPSTWIQ 177
Y VE+ +W LN ++ V GK L IQ
Sbjct: 88 EY-VEAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQ 124
Score = 37.5 bits (83), Expect = 0.17
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
+L+ +++ED+ +KKIR+ +G+RH G +VRGQ
Sbjct: 120 DLEIQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 56.8 bits (131), Expect = 3e-07
Identities = 31/93 (33%), Positives = 50/93 (53%)
Frame = -3
Query: 476 D*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*K 297
D ++I+RI NT++DG + V FA+T IKG+G R S I+ ++A +D G + + K
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 296 NYHYHVES*AVXDXDWFLNRXKDXVDGKXSQLY 198
+++ W LNR +D G+ LY
Sbjct: 127 -LRAVIDNLEANVPVWMLNRRRDIYTGEDKHLY 158
Score = 37.9 bits (84), Expect = 0.13
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
++ ++L ++ED+ +KKIR+ +G+RH G +VRGQ
Sbjct: 157 LYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRGQ 193
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 54.0 bits (124), Expect = 2e-06
Identities = 23/51 (45%), Positives = 38/51 (74%)
Frame = -3
Query: 476 D*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG 324
D F+ I+RI+NTN+DGK+++ + + +IKG+GRR + + K ++L KRAG
Sbjct: 9 DQFRQIIRILNTNVDGKQQMAYEIRSIKGIGRRFAIQICKVLRLNLTKRAG 59
Score = 41.5 bits (93), Expect = 0.010
Identities = 20/35 (57%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRG--MRHYWGLR 103
V T L++KLREDLER+KKI+ + +RH+WGLR
Sbjct: 91 VTTNELETKLREDLERIKKIKYSQWLCLRHHWGLR 125
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 52.0 bits (119), Expect = 7e-06
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Frame = -3
Query: 470 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNY 291
F++I+R+ ++DG KV +A+ +KG+G + ++ K +D D+R G + K
Sbjct: 7 FKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIE 66
Query: 290 HYHVES*AVXDXDWFLNRXKDXVDGKXSQLYLPST--WIQN------SVKIWRGSR 147
+Y + + +W NR KD G L +++N +K WRG R
Sbjct: 67 NYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVR 122
Score = 40.3 bits (90), Expect = 0.023
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -2
Query: 195 TINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
T +L +R D+ER KKI++ RG+RH GL+VRGQ
Sbjct: 98 TSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQ 132
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 51.2 bits (117), Expect = 1e-05
Identities = 28/89 (31%), Positives = 44/89 (49%)
Frame = -3
Query: 467 QHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNYH 288
+H++RIMNT++ G + V +A+T + GVGRR + ++ K A +D G + K
Sbjct: 21 RHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAK-LD 79
Query: 287 YHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ W LNR KD G+ L
Sbjct: 80 TAIGKFEDIVPSWMLNRQKDLATGQDKHL 108
Score = 42.7 bits (96), Expect = 0.004
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = -2
Query: 171 REDLERLKKIRALRGMRHYWGLRVRGQ 91
RED+ LKK+RA RG+RH GL+VRGQ
Sbjct: 118 REDINNLKKVRAYRGLRHERGLKVRGQ 144
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 50.4 bits (115), Expect = 2e-05
Identities = 21/52 (40%), Positives = 38/52 (73%)
Frame = -3
Query: 479 PD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG 324
P F+ ++R+++TN+DG+R + A+T I G+GRR + V+++A +D +RAG
Sbjct: 8 PAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAG 59
Score = 41.5 bits (93), Expect = 0.010
Identities = 17/33 (51%), Positives = 26/33 (78%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
+L + +R ++ER+KK+R RG+RH GL+VRGQ
Sbjct: 104 DLSANIRAEIERMKKMRMKRGIRHGLGLKVRGQ 136
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 48.4 bits (110), Expect = 9e-05
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = -3
Query: 470 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNY 291
F++++R+ T++DG +K++ A+ I GVG + +++ A +D +K AG + K
Sbjct: 6 FKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIE 65
Query: 290 HYHVES*AVXDXDWFLNRXKDXVDGK 213
+ W NR KD V G+
Sbjct: 66 EVLADPAKFGIPSWMFNRRKDYVTGE 91
Score = 37.1 bits (82), Expect = 0.22
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -2
Query: 171 REDLERLKKIRALRGMRHYWGLRVRGQ 91
+ED+ RLK+IR RG+RH GL RGQ
Sbjct: 105 QEDINRLKRIRCYRGIRHELGLPCRGQ 131
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 47.6 bits (108), Expect = 2e-04
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3
Query: 398 IKGVGRRXSNIVLKKADIDLDKRAG 324
IKGVGRR SNIVLKKAD+DL KRAG
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAG 25
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -1
Query: 358 KKPTLILTSVLAECTEEEVEKIITIMXNPRQYXXP 254
KK + LT ECTEEEV+K++TI+ NP QY P
Sbjct: 14 KKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48
>UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 48
Score = 44.4 bits (100), Expect = 0.001
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -2
Query: 486 GHSRLISTYSSYHEYEHRWQTQGYVCDDGYQRCWP 382
G R IST++S ++E RW+T+ +VC D +QR WP
Sbjct: 11 GSERGISTHTSCAQHERRWETEDHVCSDLHQRYWP 45
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 44.0 bits (99), Expect = 0.002
Identities = 24/90 (26%), Positives = 43/90 (47%)
Frame = -3
Query: 470 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNY 291
F+H +RI T+++GK + +A+ +KG+GR + V++ ++D ++AG + K
Sbjct: 6 FKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIE 65
Query: 290 HYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ W NR KD G L
Sbjct: 66 SVLEDPATHGIPSWMFNRKKDVYSGLDKHL 95
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 41.5 bits (93), Expect = 0.010
Identities = 16/42 (38%), Positives = 29/42 (69%)
Frame = -3
Query: 467 QHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADID 342
++ +RI T++DG + V A+T + G+G R + I+ +KAD+D
Sbjct: 21 RYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVD 62
Score = 33.9 bits (74), Expect = 2.0
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -2
Query: 171 REDLERLKKIRALRGMRHYWGLRVRGQ 91
R+D+ R+K I + RG+RH G +VRGQ
Sbjct: 118 RQDINRMKMIDSYRGVRHKRGQKVRGQ 144
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 40.3 bits (90), Expect = 0.023
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = -3
Query: 470 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNY 291
++HI+RI+ ++ G++K + + I+G+G + +L ID + G + +
Sbjct: 51 YKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASIE 110
Query: 290 HYHVES*AVXDXDWFLNRXKDXVDGKXSQLY 198
+ WFLNR KD G+ ++
Sbjct: 111 KLLQDPAGAGFPTWFLNRRKDLETGEDRHIF 141
Score = 36.7 bits (81), Expect = 0.29
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
+FT +++ +R D+ER + + +G RH +GL+VRGQ
Sbjct: 140 IFTSDIEFTVRNDVERERVSGSWKGYRHMFGLKVRGQ 176
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 39.1 bits (87), Expect = 0.054
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V + LDS L+ED++RL I+ +G+RH L+ RGQH
Sbjct: 104 VLSTVLDSALQEDIKRLVTIKNNKGLRHLSRLKTRGQH 141
Score = 35.5 bits (78), Expect = 0.67
Identities = 25/98 (25%), Positives = 48/98 (48%)
Frame = -3
Query: 458 LRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNYHYHV 279
+RI + NI+G F + IKGVG R SN++ K D++ + + + + +
Sbjct: 19 IRIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEEVVNIFG 78
Query: 278 ES*AVXDXDWFLNRXKDXVDGKXSQLYLPSTWIQNSVK 165
+S W +NR D + G L++ ST + ++++
Sbjct: 79 KSSRKAFPSWLMNRRADFLTG--DNLHVLSTVLDSALQ 114
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 37.9 bits (84), Expect = 0.13
Identities = 24/87 (27%), Positives = 43/87 (49%)
Frame = -3
Query: 461 ILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNYHYH 282
I+R+ +T+++G ++V +A+ I+G+G + + K ID G + + K +
Sbjct: 8 IVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINK-LDWA 66
Query: 281 VES*AVXDXDWFLNRXKDXVDGKXSQL 201
V + WFLNR KD G+ L
Sbjct: 67 VRNLHEVAPAWFLNRRKDPETGRDMHL 93
Score = 33.9 bits (74), Expect = 2.0
Identities = 12/27 (44%), Positives = 22/27 (81%)
Frame = -2
Query: 171 REDLERLKKIRALRGMRHYWGLRVRGQ 91
+ D++ +KK+++ +G+RH GL+VRGQ
Sbjct: 103 KRDVDLMKKLKSWKGIRHSLGLKVRGQ 129
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 37.5 bits (83), Expect = 0.17
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -3
Query: 455 RIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG 324
RI+ + +KV A+T I G+GR S +LK ID +KR G
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVG 46
>UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 82
Score = 34.3 bits (75), Expect = 1.5
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = -2
Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
L +L++++ER++ + + RG RH GL VRGQ+
Sbjct: 7 LKRRLQDNIERMRTMGSYRGRRHAMGLPVRGQN 39
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 33.1 bits (72), Expect = 3.6
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3
Query: 254 DWFLNRXKDXVDGKXSQLYLP 192
DWFLNR KD DGK SQ+ P
Sbjct: 11 DWFLNRQKDVKDGKYSQVRGP 31
>UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1;
Oltmannsiellopsis viridis|Rep: Ribosomal protein S13 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 117
Score = 33.1 bits (72), Expect = 3.6
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 177 KLREDLERLKKIRALRGMRHYWGLRVRGQ 91
K RE+++RL +I + RG RH GL RGQ
Sbjct: 72 KKRENIQRLVRISSYRGFRHTAGLPCRGQ 100
>UniRef50_Q7RQE1 Cluster: Protein factor associated with
neutral-sphingomyelinase activation; n=3; Plasmodium
(Vinckeia)|Rep: Protein factor associated with
neutral-sphingomyelinase activation - Plasmodium yoelii
yoelii
Length = 1490
Score = 33.1 bits (72), Expect = 3.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 345 NVGFFENNVGXPPANTFDSRHRKHNLAFAIDVRIHDTKNMLKLVWND 485
N+ F NN PP NTF+ ++K+N +H K M L++N+
Sbjct: 1189 NLSQFSNNCATPPINTFEKENQKYN--------VHIKKKMKNLIFNN 1227
>UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5;
Eurotiomycetidae|Rep: 40S ribosomal protein S13 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 169
Score = 33.1 bits (72), Expect = 3.6
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
+L ++ +D++RLK+ + RG RH GL VRGQ
Sbjct: 104 DLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 136
>UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7;
Pezizomycotina|Rep: 40S ribosomal protein S13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 118
Score = 33.1 bits (72), Expect = 3.6
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
+L ++ +D++RLK+ + RG RH GL VRGQ
Sbjct: 67 DLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 99
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 32.7 bits (71), Expect = 4.7
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +3
Query: 333 LVKINVGFFENNVGXPPANTFDSRHRKHNLAFAIDVRIHDTKNMLKLVWNDQA 491
L +I++ F + VG A+ D H+L ++V + D ++L+++ +D+A
Sbjct: 125 LPEIDLSLFAHQVGEAAADPLDLGQGVHHLLTTVNVGVEDADDVLEIITDDEA 177
>UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 130
Score = 32.7 bits (71), Expect = 4.7
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
+L ++ +D++RLK+ RG RH GL VRGQ
Sbjct: 66 DLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQ 98
>UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit
S37; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S37 - Schizosaccharomyces
pombe (Fission yeast)
Length = 151
Score = 32.7 bits (71), Expect = 4.7
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -2
Query: 165 DLERLKKIRALRGMRHYWGLRVRGQH 88
D+ RL IR RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 32.7 bits (71), Expect = 4.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 174 LREDLERLKKIRALRGMRHYWGLRVRGQH 88
+R+ + R +R RG RH +G +VRGQH
Sbjct: 118 VRQSINRDVTLRVWRGYRHQYGQKVRGQH 146
>UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S13 - Prototheca wickerhamii
Length = 119
Score = 32.7 bits (71), Expect = 4.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 171 REDLERLKKIRALRGMRHYWGLRVRGQ 91
R++++RL I + RG RH GL VRGQ
Sbjct: 75 RQNIQRLVNIHSYRGYRHIQGLPVRGQ 101
>UniRef50_P46760 Cluster: Mitochondrial ribosomal protein S13; n=1;
Acanthamoeba castellanii|Rep: Mitochondrial ribosomal
protein S13 - Acanthamoeba castellanii (Amoeba)
Length = 119
Score = 32.7 bits (71), Expect = 4.7
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 204 AVFTINLD-SKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
A+F NL+ +K+ ++ + KKI+ GMRH L VRGQ
Sbjct: 64 AIFFYNLEENKIFNNVNKKKKIKNYTGMRHILKLPVRGQ 102
>UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S13 -
Mycoplasma hyopneumoniae (strain 232)
Length = 137
Score = 32.3 bits (70), Expect = 6.2
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
+L +++ +++RL +I+ RG+RH GL VRGQ
Sbjct: 81 DLHREVQSNIKRLIEIKCYRGIRHRKGLPVRGQ 113
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 397,835,637
Number of Sequences: 1657284
Number of extensions: 6435350
Number of successful extensions: 14823
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 14529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14811
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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