Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0985.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   104   9e-24
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   104   9e-24
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    33   0.032
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   3.6  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   8.4  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   8.4  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  104 bits (249), Expect = 9e-24
 Identities = 55/96 (57%), Positives = 63/96 (65%)
 Frame = -3

Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
           LV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRR +NIV KKADID+ KRAG +   
Sbjct: 3   LVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTE 62

Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
              +               WFLNR KD  DGK  QL
Sbjct: 63  ELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQL 98



 Score = 56.4 bits (130), Expect = 2e-09
 Identities = 26/34 (76%), Positives = 29/34 (85%)
 Frame = -2

Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
           N+DSKLREDLERLKKI+  RG+RH   LRVRGQH
Sbjct: 102 NVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  104 bits (249), Expect = 9e-24
 Identities = 55/96 (57%), Positives = 63/96 (65%)
 Frame = -3

Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
           LV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRR +NIV KKADID+ KRAG +   
Sbjct: 3   LVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTE 62

Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
              +               WFLNR KD  DGK  QL
Sbjct: 63  ELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQL 98



 Score = 56.4 bits (130), Expect = 2e-09
 Identities = 26/34 (76%), Positives = 29/34 (85%)
 Frame = -2

Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
           N+DSKLREDLERLKKI+  RG+RH   LRVRGQH
Sbjct: 102 NVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 32.7 bits (71), Expect = 0.032
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -2

Query: 165 DLERLKKIRALRGMRHYWGLRVRGQH 88
           D+ RL  IR  RGMRH  GL V GQ+
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPVNGQN 101


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 217 VNXASCIYHQLGFKTP*RFGEAQEDSRSQRXAXLLGPSCAW 95
           VN +SC+  +   KTP  F +            LL PS +W
Sbjct: 561 VNYSSCVDPRTYVKTPIPFSKFSSSENLSLIPSLLPPSISW 601


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 185 WIQNSVKIWRGSRRFALSEXCXITGAFVCVVSTLRLLA 72
           W+ +S  ++RG     L + C +     C V  L  LA
Sbjct: 102 WVGSSKSLYRGGAASVLIDYCIVGTMVFCTVYALGELA 139


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 299 KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQLYLPSTWIQNS 171
           K Y  + +   V    WFLN   + + GK S +  P++ +  S
Sbjct: 253 KKYSINEQKDPVEFLSWFLNTLHNCLGGKKSTIAKPTSIVHYS 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,878
Number of Sequences: 5004
Number of extensions: 27286
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)