Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0985.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 99 1e-21
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 89 1e-18
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 83 9e-17
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 64 5e-11
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 37 0.008
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 1.6
09_03_0202 + 13469580-13469585,13469597-13470142 28 3.6
03_01_0646 + 4742398-4742994,4743681-4744085 27 6.3
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 99 bits (238), Expect = 1e-21
Identities = 48/90 (53%), Positives = 62/90 (68%)
Frame = -3
Query: 470 FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRRRG*KNY 291
FQHILR++NTN+DGK+K+MFA+T+IKG+GRR SNI KKADID++KRAG + +
Sbjct: 5 FQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELERLM 64
Query: 290 HYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
DWFLNR KD DG+ SQ+
Sbjct: 65 TVVANPRQFKVPDWFLNRKKDYKDGRFSQV 94
Score = 64.5 bits (150), Expect = 5e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = -2
Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
LD KLR+DLERLKKIR RG+RHYWGLRVRGQH
Sbjct: 99 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 131
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 89.4 bits (212), Expect = 1e-18
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 16/112 (14%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
L+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR SNI KKADID++KR+G +
Sbjct: 3 LIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVCYY 62
Query: 308 RG*KNYHYHVES*AVXD----------------XDWFLNRXKDXVDGKXSQL 201
NY + DWFLNR KD DG+ SQ+
Sbjct: 63 LAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQV 114
Score = 64.5 bits (150), Expect = 5e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = -2
Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
LD KLR+DLERLKKIR RG+RHYWGLRVRGQH
Sbjct: 119 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151
Score = 31.5 bits (68), Expect = 0.39
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -1
Query: 322 ECTEEEVEKIITIMXNPRQYXXP 254
E T EE+E+++T++ NPRQ+ P
Sbjct: 74 ELTPEELERLMTVVANPRQFKVP 96
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 83.4 bits (197), Expect = 9e-17
Identities = 36/53 (67%), Positives = 47/53 (88%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKR 330
L+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR SNI KKADID++KR
Sbjct: 3 LIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKR 55
Score = 64.5 bits (150), Expect = 5e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = -2
Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
LD KLR+DLERLKKIR RG+RHYWGLRVRGQH
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 153
Score = 33.5 bits (73), Expect = 0.096
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 361 SKKPTLILTSVLAECTEEEVEKIITIMXNPRQYXXP 254
S++ ++ E T EE+E+++T++ NPRQ+ P
Sbjct: 63 SRRQISVMVGGAGELTPEELERLMTVVANPRQFKVP 98
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 254 DWFLNRXKDXVDGKXSQL 201
DWFLNR KD DG+ SQ+
Sbjct: 99 DWFLNRKKDYKDGRFSQV 116
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 64.5 bits (150), Expect = 5e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = -2
Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
LD KLR+DLERLKKIR RG+RHYWGLRVRGQH
Sbjct: 29 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 201 VFTINLDSKL-REDLERLKKIRALRGMRHYWGLRVRGQ 91
V T+ + + R +ERLK+IR RG+RH GL VRGQ
Sbjct: 97 VITLRKEKRFNRVAIERLKEIRCYRGIRHKLGLPVRGQ 134
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 158 RGSRRFALSEXCXITGAFVCVVSTLRLLAGEEELLVY 48
RG + L C ++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>09_03_0202 + 13469580-13469585,13469597-13470142
Length = 183
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 79 YWQERKNCWCIKEEVN*TNKKFNSKK 2
YW + +CWC++ K+FNS++
Sbjct: 16 YWPDMHSCWCMRHMGANFFKQFNSRR 41
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 411 CDDGYQRCWPEVLQHCSQKSR 349
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,617,319
Number of Sequences: 37544
Number of extensions: 177194
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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