Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0985.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)              111   4e-25
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09

>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score =  111 bits (266), Expect = 4e-25
 Identities = 56/96 (58%), Positives = 68/96 (70%)
 Frame = -3

Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
           LVIP+ FQHILR++NTNIDGK+K+MFAMT+IKGVGRR +NIV KKADID++KRAG +   
Sbjct: 3   LVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELTED 62

Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
              +              DWFLNR KD  DGK SQ+
Sbjct: 63  EVERVVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQI 98



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 29/33 (87%), Positives = 32/33 (96%)
 Frame = -2

Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
           LD+K+REDLERLKKIRA RG+RHYWGLRVRGQH
Sbjct: 103 LDNKMREDLERLKKIRAHRGLRHYWGLRVRGQH 135


>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 25/32 (78%), Positives = 31/32 (96%)
 Frame = -3

Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIK 393
           LVIP+ FQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 3   LVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,005
Number of Sequences: 59808
Number of extensions: 210884
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)