Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0985.Seq
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18 pro... 106 4e-23
BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18 p... 106 4e-23
BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18 p... 106 4e-23
BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18 p... 106 4e-23
AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18 ... 106 4e-23
AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18 p... 106 4e-23
AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18 ... 106 4e-23
AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18 ... 106 4e-23
AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18 ... 106 4e-23
AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18 p... 106 4e-23
AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18 p... 68 2e-11
BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein protein. 65 1e-10
BX248408-4|CAM26259.1| 34|Homo sapiens ribosomal protein S18 p... 56 5e-08
AY536376-1|AAT66049.1| 34|Homo sapiens rhabdomyosarcoma antige... 56 5e-08
>X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 106 bits (255), Expect = 4e-23
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIKGVGRR +++VL+KADIDL KRAG +
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
+ DWFLNR KD DGK SQ+
Sbjct: 63 EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQV 98
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 98 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18
protein.
Length = 82
Score = 67.7 bits (158), Expect = 2e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KLREDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 28 VLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 65
Score = 32.7 bits (71), Expect = 0.73
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -3
Query: 254 DWFLNRXKDXVDGKXSQL 201
DWFLNR KD DGK SQ+
Sbjct: 11 DWFLNRQKDVKDGKYSQV 28
>BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein protein.
Length = 74
Score = 64.9 bits (151), Expect = 1e-10
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = -2
Query: 201 VFTINLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
V LD+KL EDLERLKKIRA RG+RH+WGLRVRGQH
Sbjct: 20 VLANGLDNKLCEDLERLKKIRARRGLRHFWGLRVRGQH 57
Score = 30.3 bits (65), Expect = 3.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3
Query: 251 WFLNRXKDXVDGKXSQL 201
WFLNR KD DGK SQ+
Sbjct: 4 WFLNRQKDVKDGKYSQV 20
>BX248408-4|CAM26259.1| 34|Homo sapiens ribosomal protein S18
protein.
Length = 34
Score = 56.4 bits (130), Expect = 5e-08
Identities = 24/32 (75%), Positives = 30/32 (93%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIK 393
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIK
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIK 34
>AY536376-1|AAT66049.1| 34|Homo sapiens rhabdomyosarcoma antigen
MU-RMS-40.21 protein.
Length = 34
Score = 56.4 bits (130), Expect = 5e-08
Identities = 24/32 (75%), Positives = 30/32 (93%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIK 393
LVIP+ FQHILR++NTNIDG+RK+ FA+TAIK
Sbjct: 3 LVIPEKFQHILRVLNTNIDGRRKIAFAITAIK 34
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,571,534
Number of Sequences: 237096
Number of extensions: 984266
Number of successful extensions: 5618
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5598
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -