Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0985.Seq
(499 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L22959-1|AAA28870.1| 152|Drosophila melanogaster ribosomal prot... 111 5e-25
BT024929-1|ABE01159.1| 152|Drosophila melanogaster IP16603p pro... 111 5e-25
AE013599-2985|AAM68401.1| 152|Drosophila melanogaster CG8900-PB... 111 5e-25
AE013599-2984|AAF57491.1| 152|Drosophila melanogaster CG8900-PA... 111 5e-25
AY118434-1|AAM48463.1| 152|Drosophila melanogaster RH43343p pro... 108 5e-24
BT022499-1|AAY54915.1| 246|Drosophila melanogaster IP07925p pro... 48 9e-06
AY051613-1|AAK93037.1| 905|Drosophila melanogaster GH25768p pro... 29 2.6
AE014134-604|AAF51107.2| 905|Drosophila melanogaster CG3248-PA ... 29 2.6
BT023408-1|AAY55824.1| 1585|Drosophila melanogaster AT18603p pro... 28 8.1
AE014134-1126|AAF52412.2| 1585|Drosophila melanogaster CG31635-P... 28 8.1
>L22959-1|AAA28870.1| 152|Drosophila melanogaster ribosomal protein
S18 protein.
Length = 152
Score = 111 bits (267), Expect = 5e-25
Identities = 61/96 (63%), Positives = 65/96 (67%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILRIMNTNIDGKRKV AMTAIKGVGRR SNIVLKKAD+DL KRAG
Sbjct: 3 LVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEE 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
K +WFLNR KD +DGK QL
Sbjct: 63 EVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQL 98
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
NLDSKLR+DLERLKKIR+ RG+RHYWGLRVRGQH
Sbjct: 102 NLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
>BT024929-1|ABE01159.1| 152|Drosophila melanogaster IP16603p
protein.
Length = 152
Score = 111 bits (267), Expect = 5e-25
Identities = 61/96 (63%), Positives = 65/96 (67%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILRIMNTNIDGKRKV AMTAIKGVGRR SNIVLKKAD+DL KRAG
Sbjct: 3 LVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEE 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
K +WFLNR KD +DGK QL
Sbjct: 63 EVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQL 98
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
NLDSKLR+DLERLKKIR+ RG+RHYWGLRVRGQH
Sbjct: 102 NLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
>AE013599-2985|AAM68401.1| 152|Drosophila melanogaster CG8900-PB,
isoform B protein.
Length = 152
Score = 111 bits (267), Expect = 5e-25
Identities = 61/96 (63%), Positives = 65/96 (67%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILRIMNTNIDGKRKV AMTAIKGVGRR SNIVLKKAD+DL KRAG
Sbjct: 3 LVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEE 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
K +WFLNR KD +DGK QL
Sbjct: 63 EVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQL 98
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
NLDSKLR+DLERLKKIR+ RG+RHYWGLRVRGQH
Sbjct: 102 NLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
>AE013599-2984|AAF57491.1| 152|Drosophila melanogaster CG8900-PA,
isoform A protein.
Length = 152
Score = 111 bits (267), Expect = 5e-25
Identities = 61/96 (63%), Positives = 65/96 (67%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQHILRIMNTNIDGKRKV AMTAIKGVGRR SNIVLKKAD+DL KRAG
Sbjct: 3 LVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEE 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
K +WFLNR KD +DGK QL
Sbjct: 63 EVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQL 98
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
NLDSKLR+DLERLKKIR+ RG+RHYWGLRVRGQH
Sbjct: 102 NLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
>AY118434-1|AAM48463.1| 152|Drosophila melanogaster RH43343p
protein.
Length = 152
Score = 108 bits (259), Expect = 5e-24
Identities = 60/96 (62%), Positives = 64/96 (66%)
Frame = -3
Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
LVIP+ FQ ILRIMNTNIDGKRKV AMTAIKGVGRR SNIVLKKAD+DL KRAG
Sbjct: 3 LVIPEKFQRILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEE 62
Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
K +WFLNR KD +DGK QL
Sbjct: 63 EVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQL 98
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = -2
Query: 189 NLDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
NLDSKLR+DLERLKKIR+ RG+RHYWGLRVRGQH
Sbjct: 102 NLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
>BT022499-1|AAY54915.1| 246|Drosophila melanogaster IP07925p
protein.
Length = 246
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = -3
Query: 398 IKGVGRRXSNIVLKKADIDLDKRAG 324
IKGVGRR SNIVLKKAD+DL KRAG
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAG 25
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -1
Query: 358 KKPTLILTSVLAECTEEEVEKIITIMXNPRQYXXP 254
KK + LT ECTEEEV+K++TI+ NP QY P
Sbjct: 14 KKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48
>AY051613-1|AAK93037.1| 905|Drosophila melanogaster GH25768p
protein.
Length = 905
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 314 CAFSQHACQDQCRLF*EQCWXTSGQHL 394
CAF H CQD+ RLF Q + T HL
Sbjct: 363 CAFLVHVCQDEQRLF-YQFFSTGAPHL 388
>AE014134-604|AAF51107.2| 905|Drosophila melanogaster CG3248-PA
protein.
Length = 905
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 314 CAFSQHACQDQCRLF*EQCWXTSGQHL 394
CAF H CQD+ RLF Q + T HL
Sbjct: 363 CAFLVHVCQDEQRLF-YQFFSTGAPHL 388
>BT023408-1|AAY55824.1| 1585|Drosophila melanogaster AT18603p
protein.
Length = 1585
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 400 LSKVLAGGXPTLFSKKPTLILTSVLAECTEEEVEKIITIMXNPRQYXXPT 251
L K+L+ + + P+ I T LA C E++ +I + P PT
Sbjct: 578 LDKLLSMNSESSSEEAPSNISTDTLAACCSEDISEISNEIYEPNAVKQPT 627
>AE014134-1126|AAF52412.2| 1585|Drosophila melanogaster CG31635-PA
protein.
Length = 1585
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 400 LSKVLAGGXPTLFSKKPTLILTSVLAECTEEEVEKIITIMXNPRQYXXPT 251
L K+L+ + + P+ I T LA C E++ +I + P PT
Sbjct: 578 LDKLLSMNSESSSEEAPSNISTDTLAACCSEDISEISNEIYEPNAVKQPT 627
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,762,453
Number of Sequences: 53049
Number of extensions: 308190
Number of successful extensions: 676
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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