Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0985.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...    97   6e-21
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    31   0.35 
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC103567-4|AAL35731.2|  598|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score = 97.1 bits (231), Expect = 6e-21
 Identities = 52/108 (48%), Positives = 68/108 (62%)
 Frame = -3

Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
           L+IP+ FQHI R+MNTNIDG RKV +A+TAIKGVGRR + +  +KAD+D++KRAG +   
Sbjct: 3   LIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELTEE 62

Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQLYLPSTWIQNSVK 165
              K              +WFLNR KD  DGK  QL   ST + N ++
Sbjct: 63  DFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLL--STAVDNKLR 108



 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = -2

Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
           +D+KLREDLER+KKIR  RG+RHYWGLRVRGQH
Sbjct: 103 VDNKLREDLERMKKIRLHRGLRHYWGLRVRGQH 135


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 170 VKIWRGSRRFALSEXCXITGAFVCVVSTLRLLAGEEELLVYQRRS 36
           +K +R   + AL     +TGA + + +TL LLA    LL  QR S
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNS 181


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 411  CDDGYQRCWPEVLQHCS 361
            C + YQ CWP +L  CS
Sbjct: 1512 CREYYQICWPPILLACS 1528


>AC103567-4|AAL35731.2|  598|Caenorhabditis elegans Hypothetical
           protein Y51F10.4 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 134 SEXCXITGAFVCVVSTLRLLAGEEELLVYQR 42
           ++ C I G F+ + ST  +L GE++  V ++
Sbjct: 434 AKMCLIIGLFILIASTCAILMGEKKTSVVEK 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,204,369
Number of Sequences: 27780
Number of extensions: 156899
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)