Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0985.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)           102   2e-22
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi...   102   2e-22
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc...   102   2e-22
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ...    31   0.43 
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00...    29   1.7  
At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,...    27   5.3  
At5g16460.1 68418.m01924 hypothetical protein similar to unknown...    27   7.0  
At5g07420.1 68418.m00849 pectinesterase family protein contains ...    27   9.3  

>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
          Length = 152

 Score =  102 bits (244), Expect = 2e-22
 Identities = 50/96 (52%), Positives = 65/96 (67%)
 Frame = -3

Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
           LV  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAG +   
Sbjct: 3   LVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62

Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
                             DWFLNR KD  DGK SQ+
Sbjct: 63  EIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQV 98



 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = -2

Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
           LD KLR+DLERLKKIR  RG+RHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
           to ribosomal protein S18 GI:38422 from [Homo sapiens]
          Length = 152

 Score =  102 bits (244), Expect = 2e-22
 Identities = 50/96 (52%), Positives = 65/96 (67%)
 Frame = -3

Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
           LV  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAG +   
Sbjct: 3   LVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62

Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
                             DWFLNR KD  DGK SQ+
Sbjct: 63  EIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQV 98



 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = -2

Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
           LD KLR+DLERLKKIR  RG+RHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
           to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
           A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
           gb|R30430 come from this gene
          Length = 152

 Score =  102 bits (244), Expect = 2e-22
 Identities = 50/96 (52%), Positives = 65/96 (67%)
 Frame = -3

Query: 488 LVIPD*FQHILRIMNTNIDGKRKVMFAMTAIKGVGRRXSNIVLKKADIDLDKRAG*MHRR 309
           LV  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAG +   
Sbjct: 3   LVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62

Query: 308 RG*KNYHYHVES*AVXDXDWFLNRXKDXVDGKXSQL 201
                             DWFLNR KD  DGK SQ+
Sbjct: 63  EIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQV 98



 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = -2

Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQH 88
           LD KLR+DLERLKKIR  RG+RHYWGLRVRGQH
Sbjct: 103 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135


>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
           (CS13) ribosomal protein S13 precursor, chloroplast
           Arabidopsis thaliana, PIR:S59594; identical to cDNA
           ribosomal protein S13 GI:1515106
          Length = 169

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 162 LERLKKIRALRGMRHYWGLRVRGQ 91
           ++RLK+I+  RG+RH  GL  RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145


>At5g49610.1 68418.m06139 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (gb|AAF30317.1)
          Length = 359

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 119 ITGAF-VCVVSTLRLLAGEEELLVYQRRSKLNK*KIQLK 6
           + G F +C       LA  +++LVYQRRSKL K    +K
Sbjct: 299 VPGIFPICQTGEYVFLATHKQVLVYQRRSKLWKEMFSVK 337


>At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,
           putative similar to putative 30S ribosomal protein S13,
           chloroplast precursor GB:P42732 [Arabidopsis thaliana]
          Length = 154

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 186 LDSKLREDLERLKKIRALRGMRHYWGLRVRGQ 91
           L  ++  +++RL ++   RG RH  GL  RGQ
Sbjct: 98  LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQ 129


>At5g16460.1 68418.m01924 hypothetical protein similar to unknown
           protein (pir||T02326)
          Length = 368

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 400 LSKVLAGGXPTLFSKKPTLILTSVLAECTEEEVEKIITIMXNPRQYXXPTG 248
           L+ V+  G  +L+ +KP ++   +  + TEE    + +     R +  P G
Sbjct: 108 LAVVIGVGIVSLYVEKPVVVRDRLFFDYTEENPSAVFSFDKKKRSFSVPVG 158


>At5g07420.1 68418.m00849 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 361

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 245 GTSRXLILPRIXHDSDNFFNLFFCAFSQHACQDQCRLF*EQCW 373
           GT    +  RI  D   F+N  F  F    C D+   F + C+
Sbjct: 170 GTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCY 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,530,665
Number of Sequences: 28952
Number of extensions: 141568
Number of successful extensions: 360
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)