Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0984.Seq
         (560 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B4B59 Cluster: PREDICTED: similar to LOC1000369...    39   0.069
UniRef50_Q9C0G9 Cluster: KIAA1694 protein; n=29; Euteleostomi|Re...    38   0.21 
UniRef50_Q4T3G0 Cluster: Chromosome undetermined SCAF10082, whol...    36   0.49 
UniRef50_A1DKP8 Cluster: DNA-binding protein HGH1, putative; n=1...    34   2.6  
UniRef50_Q2SKT8 Cluster: Ribulose-5-phosphate 4-epimerase and re...    32   8.0  
UniRef50_A5E1I5 Cluster: Putative uncharacterized protein; n=1; ...    32   8.0  

>UniRef50_UPI00015B4B59 Cluster: PREDICTED: similar to LOC100036991
           protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to LOC100036991 protein - Nasonia vitripennis
          Length = 925

 Score = 39.1 bits (87), Expect = 0.069
 Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = +2

Query: 254 VDKILAAKFLRRWETHVLRLEENHIVSKTVS-FVTYIIP 367
           V KIL+++FLRRWETH L L +  + SKT++ F+   +P
Sbjct: 367 VSKILSSRFLRRWETHHLYLNDACLSSKTLTGFLQQPVP 405


>UniRef50_Q9C0G9 Cluster: KIAA1694 protein; n=29; Euteleostomi|Rep:
           KIAA1694 protein - Homo sapiens (Human)
          Length = 757

 Score = 37.5 bits (83), Expect = 0.21
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +2

Query: 254 VDKILAAKFLRRWETHVLRLEENHIVSKT 340
           + KIL +KFLRRWE H L L +N + S T
Sbjct: 56  LSKILTSKFLRRWEPHHLTLADNSLASAT 84


>UniRef50_Q4T3G0 Cluster: Chromosome undetermined SCAF10082, whole
           genome shotgun sequence; n=3; Euteleostomi|Rep:
           Chromosome undetermined SCAF10082, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 87

 Score = 36.3 bits (80), Expect = 0.49
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 254 VDKILAAKFLRRWETHVLRLEENHIVSKTV 343
           + KIL +KFLRRWE H L L +  + S TV
Sbjct: 58  LSKILTSKFLRRWEPHHLTLMDGSLTSATV 87


>UniRef50_A1DKP8 Cluster: DNA-binding protein HGH1, putative; n=11;
           Pezizomycotina|Rep: DNA-binding protein HGH1, putative -
           Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
           181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
           3700 / NRRL 181))
          Length = 369

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -3

Query: 372 YTGII*VTKLTVLETMWFSSKRRTCVSHLLKNLAARILSTPS-ACVGNSTLLERLLWPAC 196
           Y G++ VTKLTV  T   S+ RR  V+  +KN+A  I   P+  C   + LL  +L P  
Sbjct: 181 YDGVVPVTKLTVF-TEHESTVRRKGVASTIKNVAFEIPFHPTLLCADEANLLPYVLLP-- 237

Query: 195 ILDPE 181
           I  PE
Sbjct: 238 ITGPE 242


>UniRef50_Q2SKT8 Cluster: Ribulose-5-phosphate 4-epimerase and
           related epimerase and aldolases; n=1; Hahella chejuensis
           KCTC 2396|Rep: Ribulose-5-phosphate 4-epimerase and
           related epimerase and aldolases - Hahella chejuensis
           (strain KCTC 2396)
          Length = 218

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 292 PSPQEFGSEDLVNTVRVCWKQHTLRAPSV 206
           P   E+GS DLVN ++  W+   L+ P V
Sbjct: 145 PESAEYGSMDLVNAIKSLWRDGKLKTPGV 173


>UniRef50_A5E1I5 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 486

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -2

Query: 376 KIYRNYIGNKTHRFRNNVVFFQTKNMRLPSPQEFGSEDLVNTVR 245
           K+   Y  NK    +N+V+ F++ + +L S + +   DLVNT+R
Sbjct: 352 KLMALYCQNKFISCKNSVIGFRSADCKLASMKTYSERDLVNTLR 395


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,367,283
Number of Sequences: 1657284
Number of extensions: 10031493
Number of successful extensions: 22363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22352
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)