Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0984.Seq
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    28   0.82 
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    25   7.6  

>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 146 PRKFSCWSTSTTSGSKIQAGHRRRSKSVLFPTHADGVDKILAAKFLRR 289
           P K     TS+    +++A  +  S +V FP   DG +K + +K LR+
Sbjct: 92  PAKAKATHTSSGVTKEVRASKKYTSSNVEFPLVTDGKEKPVKSKQLRK 139


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 373 IYR-NYIGNKTHRFRNNVVFFQTKNMRLPSP--QEFGSEDLVNTVRVCWKQHTLRAPSVA 203
           I+R NY+   T   +NNV +  T  + LP+P  + + +  L + V V     + +A S +
Sbjct: 22  IFRANYLVPLTW-LKNNVAYKSTNTLLLPTPNAEYYSTSKLSSQVNVSLNSLSQKASSGS 80

Query: 202 SLY 194
            +Y
Sbjct: 81  KIY 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,564
Number of Sequences: 5004
Number of extensions: 43526
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)