Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0984.Seq
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0095 + 11114971-11115939,11115954-11116556                       30   1.5  
07_03_0478 + 18556773-18556883,18557219-18557318,18557807-185595...    28   5.9  
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036...    27   7.7  
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188...    27   7.7  

>04_03_0095 + 11114971-11115939,11115954-11116556
          Length = 523

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = -3

Query: 333 ETMWFSSK-RRTCVSHLLKNLAARILSTPSACVGNSTLLERLLWP-ACILDPEVVLVLQQ 160
           ET ++ ++ R++C  HLL  L+A +LS    C G +  L R  +    I   +VV V   
Sbjct: 76  ETFFYEAEERKSCSGHLLDGLSAALLSR-RRCNGRNLPLRRFGFAFDSITGWDVVFVDMC 134

Query: 159 LNFLGRHCPRSI-LDL 115
           L+ + RH  + + LDL
Sbjct: 135 LHHVLRHASKELHLDL 150


>07_03_0478 +
           18556773-18556883,18557219-18557318,18557807-18559513,
           18559709-18560094,18560175-18560246,18560366-18560455
          Length = 821

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 188 SKIQAGHRRRSKSVLFPTHADGVDKILAAKFLRRWETHVLRLEENH 325
           S++++G  R ++     T       +  A F  RWE  VL LE NH
Sbjct: 171 SRLRSGATRSARKRGTKTGCKAKMIVKDAHFQNRWEVIVLELEHNH 216


>02_04_0193 -
           20801959-20802583,20803372-20803448,20803530-20803646,
           20804147-20804250,20804359-20804428,20804547-20804644,
           20804747-20804840,20805269-20805359,20805453-20805545,
           20805635-20805960,20806162-20806641
          Length = 724

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +2

Query: 179 TSGSKIQAGHRRRSKS------VLFPTHADGVDKILAAKFLRRWETHVLRL 313
           +S  K++AG  R S S      +LFP      ++I  A ++ RW T ++ +
Sbjct: 92  SSSEKLKAGKSRTSTSGKASLPILFPPSISSSNRISIAIWINRWLTSIMNI 142


>02_01_0282 +
           1882844-1883413,1883519-1883644,1883733-1883930,
           1884442-1884666,1884844-1885224,1885282-1885989,
           1886546-1886839,1887211-1887709,1887949-1888721
          Length = 1257

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 289 SPQEFGSEDLVNTVRVCWKQHTLRAPSVASLYL 191
           SP+ F +E+ + ++  C+K+ T   P + SL+L
Sbjct: 355 SPEGFFAEEHLLSIAACFKESTFCLPRIHSLWL 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,196
Number of Sequences: 37544
Number of extensions: 264955
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)