Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0984.Seq
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57171| Best HMM Match : DUF1240 (HMM E-Value=6.5)                   28   4.5  
SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08)                  28   4.5  
SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_25557| Best HMM Match : HECT (HMM E-Value=0)                        27   7.9  

>SB_57171| Best HMM Match : DUF1240 (HMM E-Value=6.5)
          Length = 248

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = -3

Query: 324 WFSSKRRTCVSHLLKNLAARILSTPSACVGNSTLLERLLWPACILDPEVVLVLQQLNFLG 145
           WF S       +L++N AARI+S        + +L+ L W          ++L    +L 
Sbjct: 62  WFRSYLTFRKLYLIQNTAARIISLTKKTEHVTPILQDLHWLPVKYRIIFKVLLTVFKYLN 121

Query: 144 RHCPRSILDLNPIDTH 97
              P  I DL    TH
Sbjct: 122 EMAPPYIKDLCKYKTH 137


>SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 287 RWETHVLRLEENHIVSKTVSFVTYIIP 367
           RWE HVLR    H+ SK +SF+++ +P
Sbjct: 171 RWEDHVLRFWRRHL-SK-LSFMSFFLP 195


>SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08)
          Length = 362

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 31/119 (26%), Positives = 45/119 (37%)
 Frame = +2

Query: 140 CRPRKFSCWSTSTTSGSKIQAGHRRRSKSVLFPTHADGVDKILAAKFLRRWETHVLRLEE 319
           CR  K   W TS T    +    R +      P  +D   +I    + R ++     L E
Sbjct: 175 CRKHKIKYWITSAT----LLGAARHKG---FIPWDSDADIEIPLEDYERFFKIASQDLPE 227

Query: 320 NHIVSKTVSFVTYIIPVYFKY**FCYAAIGFYTMTYDVDQ*AKNTYYYYYINHKTTDHD 496
           +     + S V  + P    Y    Y  IG Y  TY+     +N+ Y Y + H  T HD
Sbjct: 228 DIFFQNSESDVN-LRPDNESYERMKYKDIGLYRRTYNPRLRDRNSCYKYCLAHGCTWHD 285


>SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 337 NGEFCYLYNS 366
           NGEFCY+YNS
Sbjct: 458 NGEFCYMYNS 467


>SB_25557| Best HMM Match : HECT (HMM E-Value=0)
          Length = 454

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 162 QLNFLGRHCPRSILDLNPIDTHISYYLCKTYKFLMNF 52
           +  FLGR   R++LD   +D   S   C  YK+++ F
Sbjct: 118 KFRFLGRFLGRALLDFRMVDIPFS---CAFYKWMLGF 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,182,101
Number of Sequences: 59808
Number of extensions: 317190
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)