BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0984.Seq (560 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_57171| Best HMM Match : DUF1240 (HMM E-Value=6.5) 28 4.5 SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5 SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08) 28 4.5 SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9 SB_25557| Best HMM Match : HECT (HMM E-Value=0) 27 7.9 >SB_57171| Best HMM Match : DUF1240 (HMM E-Value=6.5) Length = 248 Score = 28.3 bits (60), Expect = 4.5 Identities = 21/76 (27%), Positives = 31/76 (40%) Frame = -3 Query: 324 WFSSKRRTCVSHLLKNLAARILSTPSACVGNSTLLERLLWPACILDPEVVLVLQQLNFLG 145 WF S +L++N AARI+S + +L+ L W ++L +L Sbjct: 62 WFRSYLTFRKLYLIQNTAARIISLTKKTEHVTPILQDLHWLPVKYRIIFKVLLTVFKYLN 121 Query: 144 RHCPRSILDLNPIDTH 97 P I DL TH Sbjct: 122 EMAPPYIKDLCKYKTH 137 >SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 311 Score = 28.3 bits (60), Expect = 4.5 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +2 Query: 287 RWETHVLRLEENHIVSKTVSFVTYIIP 367 RWE HVLR H+ SK +SF+++ +P Sbjct: 171 RWEDHVLRFWRRHL-SK-LSFMSFFLP 195 >SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08) Length = 362 Score = 28.3 bits (60), Expect = 4.5 Identities = 31/119 (26%), Positives = 45/119 (37%) Frame = +2 Query: 140 CRPRKFSCWSTSTTSGSKIQAGHRRRSKSVLFPTHADGVDKILAAKFLRRWETHVLRLEE 319 CR K W TS T + R + P +D +I + R ++ L E Sbjct: 175 CRKHKIKYWITSAT----LLGAARHKG---FIPWDSDADIEIPLEDYERFFKIASQDLPE 227 Query: 320 NHIVSKTVSFVTYIIPVYFKY**FCYAAIGFYTMTYDVDQ*AKNTYYYYYINHKTTDHD 496 + + S V + P Y Y IG Y TY+ +N+ Y Y + H T HD Sbjct: 228 DIFFQNSESDVN-LRPDNESYERMKYKDIGLYRRTYNPRLRDRNSCYKYCLAHGCTWHD 285 >SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 996 Score = 27.5 bits (58), Expect = 7.9 Identities = 9/10 (90%), Positives = 10/10 (100%) Frame = +1 Query: 337 NGEFCYLYNS 366 NGEFCY+YNS Sbjct: 458 NGEFCYMYNS 467 >SB_25557| Best HMM Match : HECT (HMM E-Value=0) Length = 454 Score = 27.5 bits (58), Expect = 7.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 162 QLNFLGRHCPRSILDLNPIDTHISYYLCKTYKFLMNF 52 + FLGR R++LD +D S C YK+++ F Sbjct: 118 KFRFLGRFLGRALLDFRMVDIPFS---CAFYKWMLGF 151 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,182,101 Number of Sequences: 59808 Number of extensions: 317190 Number of successful extensions: 683 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 627 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 681 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1312894764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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